Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g1375 ATGGCGGCCCATTTTGACATCACAAATAGATGTCCCTACACCGTATGGGCCGCGGCAGTGCCAACTGGCGGAGGCAGACAGCTTAACTCTGGCGAGACATGGGGAATTGATGTTGCTTCCGGTACGGCCGGGGCACGCATATGGGCTCGAACCAATTGCAACTTCGATGGGTCTGGAAGAGGACATTGCCAGACCGGTGATTGTGGTGGTGTACTACAATGCACAGCGTACGGCGCAGCGCCTGACACTCTTGCGGAGTTTGCCCTAAACCAATTCAATAACTTAGACTTTTATGATATTTCACTTGTTGATGGGTTCAATGTTCCAATGGAATTTAGCCCTACCTCAAATGGGTGCACCCGTGCTATTAGGTGCACTGCTGACATAAATGGACAATGCCCTAGTGTGCTTAAAGCTGATGGTGGATGCAACAACCCTTGTACTGTATTCAAAACTGATCAATATTGTTGCAATTCTGGTAGTTGTCAACCCACAGATTATTCAAGATTCTTCAAGGATAGGTGCCCTGATGCATATAGTTACCCTAAGGATGACCAAACAAGCACATTTACATGCCCTGGAGGAACTAACTATAGGGTTGTATTTTGCCCTTGA 615 0.4732 MAAHFDITNRCPYTVWAAAVPTGGGRQLNSGETWGIDVASGTAGARIWARTNCNFDGSGRGHCQTGDCGGVLQCTAYGAAPDTLAEFALNQFNNLDFYDISLVDGFNVPMEFSPTSNGCTRAIRCTADINGQCPSVLKADGGCNNPCTVFKTDQYCCNSGSCQPTDYSRFFKDRCPDAYSYPKDDQTSTFTCPGGTNYRVVFCP 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g1375 204 ProSiteProfiles Thaumatin family profile. 2 204 IPR001938 -
Lal15g1375 204 ProSitePatterns Thaumatin family signature. 59 74 IPR017949 -
Lal15g1375 204 Pfam Thaumatin family 9 204 IPR001938 -
Lal15g1375 204 SUPERFAMILY Osmotin, thaumatin-like protein 3 204 IPR037176 -
Lal15g1375 204 SMART tha2 5 204 IPR001938 -
Lal15g1375 204 PRINTS Pathogenesis-related protein signature 4 16 IPR001938 -
Lal15g1375 204 PRINTS Pathogenesis-related protein signature 24 33 IPR001938 -
Lal15g1375 204 PRINTS Pathogenesis-related protein signature 46 57 IPR001938 -
Lal15g1375 204 PRINTS Pathogenesis-related protein signature 59 88 IPR001938 -
Lal15g1375 204 PRINTS Pathogenesis-related protein signature 96 112 IPR001938 -
Lal15g1375 204 PRINTS Pathogenesis-related protein signature 194 203 IPR001938 -
Lal15g1375 204 Gene3D Thaumatin 3 204 IPR037176 -
Lal15g1375 204 PANTHER OS03G0233200 PROTEIN 2 204 IPR001938 -
Lal15g1375 204 PIRSF PR5 1 204 IPR001938 -
Lal15g1375 204 PANTHER PROTEIN P21 2 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g1375 Lal-Chr15 15889022 15889636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g1375 1 204 Receptor kinase-like Gene Family AT5G38280 38.696 6.37e-45 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g1375 - - vra:106767605 384.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1518 23 15355476 15356204 Lal15g1375 15 15889022 15889636 PCT