Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0968 ATGGGTTCCGAAGGATCAACCGTTATAGTTCCTAGGAGTTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAAGGAATTGGAGATGGAACTGTTAGCTATGGAATGGATGATGCTGATGATGTATACATGCAATCGTGGACTGGTACTATTATTGCCCCCCCTGGTACTGTTCATGAAGGGCGTATCTACCAGTTGAAGTTGTTTTGTGGCCAGGATTATCCAGACAATCCACCATCTGTTAGATTTCAAACAAGGATTAACATGACTTGCGTCAACCAAGAAACTGGAGTGGTTGAGCCACATTTGTTTCCCATGCTTGCTAATTGGCAAAGAGAGTGTACAATGGAAGACATTTTGATGCAATTGAAGAAAGAAATGACGTCTCCACAAAACCGGAAGCTAGCTCAGCCTCCTGAAGGTGTGGCAATGAAGAAGGCAGGATTGACCAGAAGGGGTTAG 462 0.4394 MGSEGSTVIVPRSFRLLEELERGEKGIGDGTVSYGMDDADDVYMQSWTGTIIAPPGTVHEGRIYQLKLFCGQDYPDNPPSVRFQTRINMTCVNQETGVVEPHLFPMLANWQRECTMEDILMQLKKEMTSPQNRKLAQPPEGVAMKKAGLTRRG 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0968 153 Pfam Ubiquitin-conjugating enzyme 41 137 IPR000608 -
Lal15g0968 153 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 VARIANT 1A-LIKE 8 142 - -
Lal15g0968 153 Gene3D Ubiquitin Conjugating Enzyme 2 145 IPR016135 -
Lal15g0968 153 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 11 153 IPR000608 -
Lal15g0968 153 MobiDBLite consensus disorder prediction 129 153 - -
Lal15g0968 153 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 8 142 - -
Lal15g0968 153 SUPERFAMILY UBC-like 9 143 IPR016135 -
Lal15g0968 153 SMART ubc_7 14 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0968 Lal-Chr15 7632160 7638032 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0968 K10704 - gmx:100527089 284.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0968 15 7632160 7638032 Lal15g0968 15 7632160 7638032 ECH
Lal16g0986 16 6563170 6567724 Lal15g0968 15 7632160 7638032 LSH