Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0916 ATGGATGATGCATATGAAGAAGAGTGTGATTACTTGTTCAAGGCTGTTCTTATTGGAGACTCTGGAGTTGGGAAATCAAATCTGCTATCAAGGTTTGCAAAAGATGAATTTCGTTTGGATTCTAAGCCAACCATAGGAGTGGAATTTGCTTACAGGAACATTAAGGTTAGAGATAAACTCATCAAAGCTCAGATATGGGATACTGCTGGCCAAGAAAGATTTAGAGCTATCACAAGCTCATACTATAGAGGAGCCATGGGGGCATTGCTAGTGTATGACATAACAAAGAGATCAAGTTATGAAAACTTGAGTAAATGGTTATTAGAGTTAAGAGATTTTGGAGGCCAAGACATGGTGGTTATTCTAGTGGGAAATAAAGCTGATCTTGACCAATCAAGAGAAGTTGAGAAAGAAGAAGGAAAAGGGTTTGCTGAAAAAGAAGGGTTTTGTTTCATGGAAACCTCTGCTTTAAAGAATATGAATGTTGAGGAAGTATTCTTACAAATGATCATAAAGGTTTATGATATTACAAGGCAGAGAAATGTAGAAGCCAAAATGAATGAGAAAGAGATTAATATTTTGAGTGGGAAAGAGATTCATGTAGTTGTTGATGAAGTTACTACAACTAAACAAGCTATTTGTTGTTCAATATGA 654 0.3578 MDDAYEEECDYLFKAVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYRNIKVRDKLIKAQIWDTAGQERFRAITSSYYRGAMGALLVYDITKRSSYENLSKWLLELRDFGGQDMVVILVGNKADLDQSREVEKEEGKGFAEKEGFCFMETSALKNMNVEEVFLQMIIKVYDITRQRNVEAKMNEKEINILSGKEIHVVVDEVTTTKQAICCSI 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0916 217 ProSiteProfiles small GTPase Rab1 family profile. 8 214 - -
Lal15g0916 217 ProSiteProfiles small GTPase Rho family profile. 6 174 - -
Lal15g0916 217 ProSiteProfiles small GTPase Ras family profile. 7 217 IPR001806 GO:0003924|GO:0005525
Lal15g0916 217 Pfam Ras family 14 173 IPR001806 GO:0003924|GO:0005525
Lal15g0916 217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 190 IPR027417 -
Lal15g0916 217 SMART rab_sub_5 13 176 - -
Lal15g0916 217 SMART rho_sub_3 15 176 IPR001806 GO:0003924|GO:0005525
Lal15g0916 217 TIGRFAM small_GTP: small GTP-binding protein domain 12 166 IPR005225 GO:0005525
Lal15g0916 217 PANTHER SMALL GTPASE SUPERFAMILY, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 1 216 - -
Lal15g0916 217 SMART ras_sub_4 10 174 - -
Lal15g0916 217 CDD Rab11_like 10 174 - -
Lal15g0916 217 PANTHER DRAB5-RELATED 1 216 - -
Lal15g0916 217 Gene3D - 5 215 IPR027417 -
Lal15g0916 217 SMART ran_sub_2 18 217 - -
Lal15g0916 217 PRINTS Transforming protein P21 ras signature 13 34 - -
Lal15g0916 217 PRINTS Transforming protein P21 ras signature 36 52 - -
Lal15g0916 217 PRINTS Transforming protein P21 ras signature 54 76 - -
Lal15g0916 217 PRINTS Transforming protein P21 ras signature 116 129 - -
Lal15g0916 217 PRINTS Transforming protein P21 ras signature 151 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0916 Lal-Chr15 7013051 7015879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0916 14 166 EF-hand Containing Proteins AT5G27540 30.909 8.09e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0916 K07976 - gmx:100784107 350.517
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0916 15 7013051 7015879 Lal15g0916 15 7013051 7015879 ECH
Lal15g0916 15 7013051 7015879 Lal23g0694 23 9641317 9646125 LSH