Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0509 ATGAGACTTCTTCAATGTCCCTCATGTTGCAACTTAGATAACAAAGAATCACAAGCTCATTCCCATAATCATCTTAACTCAGAATTATCAACCTCTTCCTCACTCTCTTCACAACCAAGTCTTCCTTCTGTTCCTTCACTAACCCCACAATCTCAATCCCAAACCACACACCACAAACTCTTAACCACAATCAATAACCATTCCTCTCCCATCGTTTCCCTCGCTTTACATGGTAAGTTTCTATATAGTGGCTCCTCCAACAGTGAGATAATAAGAGCATGTATCACTAACAATGATAACAATAACGTGGTTGTAGCAATCAGCAATGGAGTCATAAAGTCTTTAATTGTTTTTGGTGATAAACTTTTCAGTGCACACCAAGACCACAAAATCCGTGTTTGGAAAATTGAAACCAATAGTTCTCCAAATGAAAGATACAAATGCATAGCAACCCTACCCACTTTCAATGACCGAATTTCAAAGCTGTTTTCTTCAAAGAACTATGTGAAAGTTCGACGGCATAAAAAGTACACATGGGTGCATCACGTGGACACTGTTTCTGCTCTTGCTTTGTCAAGTGATGGTTCACTTCTTTACTCAGCTTCATGGGATAGAACATTCAAAATATGGAGAACCTCAGATTTCAAGTGTTTGGAGTCAGTTAGAAACGCACATGATGATGCCATCAATGCTTTGGTTTTGTCCAATGATGGAGTTGTTTACACTGGATCAGCTGATAAGAAGATCAAGGTATGGAAAAGTAGTGATAATAAGAATAATCATCAAAAGCAGCATACTTTGTTAGGAACATTGGAAAAACATAAATCAGCAGTGAATGCATTGGCTCTTAGCACAGATGGGTCAATATTGTATTCTGGTGCATGTGACAGATCAATTTTGGTATGGGAAAACAAAAGTACAAATAATAATGATATTAATATTAATATTAATATTGTGTTAGTGGGTGCATTAAGAGGGCACACAAAGGCTATATTATGTTTGGTGGTGGTGGCAGATTTGGTATGTAGTGGTTCAGCTGATAACAGTGTTAGGATATGGAGGAGAGGGATTGAGTGGAATTATTCATGTTTGGCTGTATTGGAAGGACATAGAAAACCTGTGAAGTGTTTGGCTATTGGAGTTGAATCCAATAATGGTGGTCCTCATAATAATGATGATGATAATAATACTAGTTCCTATCATCTTTACAGTGGTAGTCTTGATTGTGACATTAAACTCTGGCAAATACGTACTATTCCCACCTTGTCTTGA 1272 0.375 MRLLQCPSCCNLDNKESQAHSHNHLNSELSTSSSLSSQPSLPSVPSLTPQSQSQTTHHKLLTTINNHSSPIVSLALHGKFLYSGSSNSEIIRACITNNDNNNVVVAISNGVIKSLIVFGDKLFSAHQDHKIRVWKIETNSSPNERYKCIATLPTFNDRISKLFSSKNYVKVRRHKKYTWVHHVDTVSALALSSDGSLLYSASWDRTFKIWRTSDFKCLESVRNAHDDAINALVLSNDGVVYTGSADKKIKVWKSSDNKNNHQKQHTLLGTLEKHKSAVNALALSTDGSILYSGACDRSILVWENKSTNNNDINININIVLVGALRGHTKAILCLVVVADLVCSGSADNSVRIWRRGIEWNYSCLAVLEGHRKPVKCLAIGVESNNGGPHNNDDDNNTSSYHLYSGSLDCDIKLWQIRTIPTLS 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0509 423 SMART WD40_4 172 211 IPR001680 GO:0005515
Lal15g0509 423 SMART WD40_4 57 94 IPR001680 GO:0005515
Lal15g0509 423 SMART WD40_4 360 415 IPR001680 GO:0005515
Lal15g0509 423 SMART WD40_4 317 354 IPR001680 GO:0005515
Lal15g0509 423 SMART WD40_4 100 135 IPR001680 GO:0005515
Lal15g0509 423 SMART WD40_4 264 303 IPR001680 GO:0005515
Lal15g0509 423 SMART WD40_4 214 253 IPR001680 GO:0005515
Lal15g0509 423 CDD WD40 60 415 - -
Lal15g0509 423 Gene3D - 266 422 IPR015943 GO:0005515
Lal15g0509 423 Pfam WD domain, G-beta repeat 178 210 IPR001680 GO:0005515
Lal15g0509 423 Pfam WD domain, G-beta repeat 362 414 IPR001680 GO:0005515
Lal15g0509 423 Pfam WD domain, G-beta repeat 267 302 IPR001680 GO:0005515
Lal15g0509 423 Pfam WD domain, G-beta repeat 216 253 IPR001680 GO:0005515
Lal15g0509 423 Pfam WD domain, G-beta repeat 321 353 IPR001680 GO:0005515
Lal15g0509 423 ProSiteProfiles Trp-Asp (WD) repeats profile. 324 353 IPR001680 GO:0005515
Lal15g0509 423 ProSiteProfiles Trp-Asp (WD) repeats profile. 179 220 IPR001680 GO:0005515
Lal15g0509 423 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 271 303 - -
Lal15g0509 423 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 222 253 - -
Lal15g0509 423 PRINTS G protein beta WD-40 repeat signature 198 212 IPR020472 -
Lal15g0509 423 PRINTS G protein beta WD-40 repeat signature 240 254 IPR020472 -
Lal15g0509 423 PRINTS G protein beta WD-40 repeat signature 341 355 IPR020472 -
Lal15g0509 423 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 179 210 - -
Lal15g0509 423 MobiDBLite consensus disorder prediction 23 56 - -
Lal15g0509 423 ProSiteProfiles Trp-Asp (WD) repeats profile. 271 303 IPR001680 GO:0005515
Lal15g0509 423 Gene3D - 11 171 IPR015943 GO:0005515
Lal15g0509 423 Gene3D - 172 265 IPR015943 GO:0005515
Lal15g0509 423 PANTHER VEGETATIVE INCOMPATIBILITY PROTEIN HET-E-1-LIKE ISOFORM X1 3 416 - -
Lal15g0509 423 MobiDBLite consensus disorder prediction 21 56 - -
Lal15g0509 423 ProSiteProfiles Trp-Asp (WD) repeats profile. 222 262 IPR001680 GO:0005515
Lal15g0509 423 SUPERFAMILY WD40 repeat-like 58 417 IPR036322 GO:0005515
Lal15g0509 423 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 3 416 IPR045182 -
Lal15g0509 423 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 324 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0509 Lal-Chr15 3532881 3534152 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0509 224 423 Acyl Lipid Metabolism Gene Families AT3G18860 25.604 1.39e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0509 - - gmx:100778775 513.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0509 15 3532881 3534152 Lal15g0509 15 3532881 3534152 ECH