Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0288 ATGGACAAAGATTCAGCTCATAATAATAATCACTATCTTCCTTCAAATTCATCTTCTTCTAACCATGTGAAGCGTTTATTGAACTCTGATCATTATATTTCACCTTCAAAATCTTTATGCTCTGATAGGTTCATACCATGTAGATCCACTTCAAATTTTGCTTTGTTTCATATTCCTAACTCTGAAAAAGATACCTCCACCGCTTATAACTCTCTACTTCGTACAGCGTTATTCGGACCCAATGCTCCCGTTACGCCTCATAAACGGAGCTCCGGTAATATTTTCCGTTACAAAACGGAGACATGCCACAACATGCACGCCCTATCTCCCTTTCTCGTTCACGATGATGTGCGTCCTGACACTAATTACAATTATACCCCTCTCGTTAAGCCTCACAGGAAGGTTCCTAAATCGCCTTTCAAGGTTTTGGATGCCCCTGCATTGCAAGACGATTTTTATCTTAATCTTGTGGATTGGTCTTCCCACAATGTCTTGGCTGTGGGTCTGGGTAGCTGTGTGTATTTGTGGAACTCTTCCAGCAGCAAGGTAACTAGATTATGCGATTTGGGGATTGACGACTATGTTTGTTCAGTTGAGTGGGCCCATCGTGGTACATACATTGCTGTTGGAACTAGCAAGGGTAAAGTGAAGATTTGGGATGCATCTCAATGCAAGACGATAAGAACGATGGACGGCCATCGACTACGTGTTGGGGCCTTGGCCTGGAGTTCATCTATTTTATCCTCTGGTGGCCGGGATAAAAGCATTTATCAACGAGATATACGTGTGAAGGAAGATTTTATCAGTAAAATGTCAGGGCACAAGTCAGAGGTTTGTGGACTGAAGTGGTCTTATGATAACCATGAGCTGGCATCCGGAGGAAATGACAACAGGTTGCTTGTTTGGAATCATCACTCAGTCCAGCCTGTCCTGAAGTACTGTGAGCATACGGCAGCTGTTAAAGCTATTGCGTGGTCTCCTCATGTTAATGGACTTCTTGCATCGGGGGGAGGTACTGCGGACCGATGTATTCGTTTCTGGAATACAACCACAAACTCACACTTAAACTGTGTGGACACTGGAAGTCAGGTTTGCAATCTTGTCTGGTCTAAAAATGTCAATGAGCTGGTAAGCACACATGGCTACTCCCAGAACCAAATAATAGTTTGGAAATATCCCTCCATGTCGAAGGTGGCAACTCTTACAGGCCATACTTATAGAGTTCTCTACCTTGCCATCTCTCCTGATGGGCAGACTATTGTCACTGGAGCTGGAGATGAAACACTTAGGTTTTGGAATGTCTTTCCTTCCCAGAAATCACAGAATGCTGAGAGTGAAATTGGAGCATTTTCTTTTGGAAGAACTACTATTAGGTGA 1377 0.4343 MDKDSAHNNNHYLPSNSSSSNHVKRLLNSDHYISPSKSLCSDRFIPCRSTSNFALFHIPNSEKDTSTAYNSLLRTALFGPNAPVTPHKRSSGNIFRYKTETCHNMHALSPFLVHDDVRPDTNYNYTPLVKPHRKVPKSPFKVLDAPALQDDFYLNLVDWSSHNVLAVGLGSCVYLWNSSSSKVTRLCDLGIDDYVCSVEWAHRGTYIAVGTSKGKVKIWDASQCKTIRTMDGHRLRVGALAWSSSILSSGGRDKSIYQRDIRVKEDFISKMSGHKSEVCGLKWSYDNHELASGGNDNRLLVWNHHSVQPVLKYCEHTAAVKAIAWSPHVNGLLASGGGTADRCIRFWNTTTNSHLNCVDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWKYPSMSKVATLTGHTYRVLYLAISPDGQTIVTGAGDETLRFWNVFPSQKSQNAESEIGAFSFGRTTIR 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0288 458 Pfam WD domain, G-beta repeat 397 433 IPR001680 GO:0005515
Lal15g0288 458 Pfam WD domain, G-beta repeat 269 303 IPR001680 GO:0005515
Lal15g0288 458 Pfam WD domain, G-beta repeat 308 348 IPR001680 GO:0005515
Lal15g0288 458 ProSiteProfiles Trp-Asp (WD) repeats profile. 271 303 IPR001680 GO:0005515
Lal15g0288 458 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 401 434 - -
Lal15g0288 458 PANTHER PROTEIN FIZZY-RELATED 1 14 458 - -
Lal15g0288 458 ProSiteProfiles Trp-Asp (WD) repeats profile. 401 442 IPR001680 GO:0005515
Lal15g0288 458 ProSitePatterns Trp-Asp (WD) repeats signature. 420 434 IPR019775 -
Lal15g0288 458 SMART WD40_4 264 303 IPR001680 GO:0005515
Lal15g0288 458 SMART WD40_4 394 433 IPR001680 GO:0005515
Lal15g0288 458 SMART WD40_4 136 177 IPR001680 GO:0005515
Lal15g0288 458 SMART WD40_4 223 260 IPR001680 GO:0005515
Lal15g0288 458 SMART WD40_4 306 348 IPR001680 GO:0005515
Lal15g0288 458 SMART WD40_4 180 220 IPR001680 GO:0005515
Lal15g0288 458 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 14 458 IPR033010 GO:0010997|GO:0097027|GO:1904668
Lal15g0288 458 Pfam Anaphase-promoting complex subunit 4 WD40 domain 190 244 IPR024977 -
Lal15g0288 458 MobiDBLite consensus disorder prediction 1 21 - -
Lal15g0288 458 Gene3D - 129 437 IPR015943 GO:0005515
Lal15g0288 458 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 271 303 - -
Lal15g0288 458 ProSiteProfiles Trp-Asp (WD) repeats profile. 195 229 IPR001680 GO:0005515
Lal15g0288 458 SUPERFAMILY WD40 repeat-like 137 442 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0288 Lal-Chr15 1939662 1945943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0288 290 434 Miscellaneous Gene Families AT5G08390 22.069 2.69e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0288 K03364 - gmx:100780928 713.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0288 15 1939662 1945943 Lal15g0288 15 1939662 1945943 ECH