Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0263 ATGAATAATGCAAAGGGCAAGGGAAAATACAAGGATATTGTTATAGGAGGTGACTCTGGAAGCGGTAGTAGGACCAAATCTCTTCATCCCCCAATTGAGACACATTGGAGTCTTCCTAACTGTGAAGATAAAAAGACTTCATCATCCTCCATCAAGTCACTGTTCTCCTACCCGCTCATGATACTTAGAAGGAGCAAAAGCATGCAAGTCATTCTAGAAGGTCCCCGTGATTCAAAAGACGCACAAGTAGTCGAGGATTTCCGCAAAATGCTTTTTGTTGAAGGTCTTTTACCCCCTCAACATAATGATTATCATACTCTTTTAAGGTTTCTGCGCATGAGGGATTTTGATATGTCAGCAGCCAAAGACATGTTTCTGAATTACTTGAAATGGCGCGAGGAATCTCGAGTAGACATGCTTCCTAAGGAATTCAAATTCACGGAGTACACAGAAGTAAAGAAAATCTATCCTCATGGATTCCATGGAGTTGATAGAGATGGAAGACCCGTGTATATTGAGAGAATTGGGATGGTAGACCTTAACAAACTAATGCAAGTAACCACAATTGAAAGATTTATTAAGTATCATGTGTCAGAGCAAGAGAAAACACTTAGAGTAAGATACCCTGCATGTTCACTGGCATCTAAAAGGCATATAGCATCCACTACAAGTATCTTGGATGTCAATGGAGTTGGAATGTCTAATTTCTCGAAGCCTGCAAGGTACCTCTTTTTGGAAATTCAGAAGATTGATAGCGATTACTATCCTGAGACTCTAAATCAGCTTTTTATTATTAATGCTGGATCTGGATTTAGAATGCTGTGGAAAGCCGTGAAGACATTCCTAGATGTACGCACAGCAGCAAAAATTCAAGTGTTGGGCTCTAATTATCTTAGTGCACTGCTTGAAGCTATTGATCCAGGTAATTTGCCTACTTTTCTTGGTGGTAACTGCACATGTTCTGACTATGGAGGTTGCCTGATGAGTGATGAAGGCCCCTGGAAAAATCCAGAATTGTTAGAAATGATTCAGGCCATTTCGATGAGAGAAGGGAACGATGGCAAATGTGAAAATGGCGATGTGGTCTCAGAAGATTCCTTGATGCCCAAAAAGGTTGACATACAAAACAAAAATGAGTTTCGTATGAGTCTGGCTCTTGAGGAGACAACATGTATGTTAGCATTACAAAAAGTCAAAGGTCTAGAAGCTGCAATAGGAGACACCAAGAATATAATCAAGAAACTTGAAGATGCACTTCAGGACACCAGGATGGCCTTAAAAGAACTTGCACAGCACATACAAAAGCTAAAAACGTGA 1317 0.4017 MNNAKGKGKYKDIVIGGDSGSGSRTKSLHPPIETHWSLPNCEDKKTSSSSIKSLFSYPLMILRRSKSMQVILEGPRDSKDAQVVEDFRKMLFVEGLLPPQHNDYHTLLRFLRMRDFDMSAAKDMFLNYLKWREESRVDMLPKEFKFTEYTEVKKIYPHGFHGVDRDGRPVYIERIGMVDLNKLMQVTTIERFIKYHVSEQEKTLRVRYPACSLASKRHIASTTSILDVNGVGMSNFSKPARYLFLEIQKIDSDYYPETLNQLFIINAGSGFRMLWKAVKTFLDVRTAAKIQVLGSNYLSALLEAIDPGNLPTFLGGNCTCSDYGGCLMSDEGPWKNPELLEMIQAISMREGNDGKCENGDVVSEDSLMPKKVDIQNKNEFRMSLALEETTCMLALQKVKGLEAAIGDTKNIIKKLEDALQDTRMALKELAQHIQKLKT 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0263 438 MobiDBLite consensus disorder prediction 1 40 - -
Lal15g0263 438 SUPERFAMILY CRAL/TRIO domain 148 343 IPR036865 -
Lal15g0263 438 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 22 436 - -
Lal15g0263 438 PRINTS Cellular retinaldehyde-binding protein signature 106 128 - -
Lal15g0263 438 PRINTS Cellular retinaldehyde-binding protein signature 275 294 - -
Lal15g0263 438 PRINTS Cellular retinaldehyde-binding protein signature 308 317 - -
Lal15g0263 438 Pfam CRAL/TRIO domain 157 316 IPR001251 -
Lal15g0263 438 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 148 322 IPR001251 -
Lal15g0263 438 Gene3D - 136 347 IPR036865 -
Lal15g0263 438 CDD SEC14 149 317 IPR001251 -
Lal15g0263 438 SUPERFAMILY CRAL/TRIO N-terminal domain 77 141 IPR036273 -
Lal15g0263 438 SMART CRAL_TRIO_N_2 103 128 IPR011074 -
Lal15g0263 438 Gene3D - 64 134 - -
Lal15g0263 438 SMART sec14_4 148 319 IPR001251 -
Lal15g0263 438 Coils Coil 398 432 - -
Lal15g0263 438 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH11 22 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0263 Lal-Chr15 1795292 1800438 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0263 107 313 Acyl Lipid Metabolism Gene Families AT5G47730 31.100 2.34e-23 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0263 - - aip:107643040 623.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0263 15 1795292 1800438 Lal15g0263 15 1795292 1800438 ECH