Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0086 ATGGATATCAGATTCCCGTTTTCTCCAGCTGAGGTTGCCAAAGTTCGAATGGTTCAGTTTGGAATACTCAGTCCTGATGAAATTAGGCAAATGTCTGTAGTGCAAATTGAACATGGTGAAACCACAGAGAGGGGAAAGCCTAAGGTTGGAGGATTAAGCGATCCTCGCCTTGGAACCATTGATAGGAAAATGAAATGTGAGACTTGTACTGCAAGTATGGCTGAGTGTCTGGGTCATTTCGGTCACTTGGAGCTTGCTAAACCCATGTTTCACATCGGCTGGCACAATGAGAGTGAAAGAGGAACCATAACCCCTGGGGATACCGTGGTTAGAATTGAAAAAGGGGAACTACTTACTGGAACTCTTTGCAAAAAGACACTTGGAGCATCTACTGGAAGTCTCATTCATGTCATTTGGGAAGAGGTTGGCCCTGATGCAGCTCGTAAATTTCTTGGTCATACTCAGTGGCTTGTGAACTACTGGCTTTTGCAGAATGCATTTAGCATTGGAATTGGTGATACGATTGCTGATGCGTCGACTATGGAGGTTATTAATCAGACTATTTCACAAGCTAAGGAGAAAGTGAAACAACTCACCAGGGATGCTCAAGAAAAGAAGTTGGAGGTTGAACCTGGTCGGACAATGATGGATTCATTTGAAAATAGAGTGAATCAGACTCTGAATAGAGCTCGTGATGATGCTGGAAATAGTGCACAGAAAAGTTTATCTGAGAGCAATAATCTGAAAGCAATGGTTACAGCCGGTTCCAAGGGAAGTTTTATCAACATATATCAGATGACGGCTTGTGTGGGCCAACAAAATGTCGAGGGTAAGCGAATTCCATATGGGTTCATAGACCGGACATTGCCCCACTTTACAAAAGATGATTATGGGCCTGAAAGTCGTGGATTTGTGGAAAACTCATATCTCCGTGAACTGACTCCTCAGGAATTCTTTTTCCATGCCATGGGTGGTAAGGAAGGTCTTATTGATACTGCAGTGAAGACTTCTGAAACTGGGTACATTCAAAGGCGACTTGTGAAGGCTATGGAGGATATCATGTGTAAATATGATGGGACTAATTTGACAGTTTTTAAGTATGAGTTTGATGATGAAAAGTGGAAGCCTAGTTACACGCTTGAAGAGCCTGCAGAAGACCTGAAAACTATCATAGAGTTTCGTAGTGTGTTTGAGGCTGAAGTTCAAAAGCTTGAAGCTGACAGATTTCAACTTGCAACTGAGATAGCCACTACTGGCGACAGTTCTCTGCCACTACCTGTTAACCTTAAGAGACTTATCTGGAATGCTCAAAAGACCTTTAAGGTTGACTTCCGAAGGCCTTCTGACATGCATCCTATGGAAATTGTTGAAGCTATCGATAAGCTCCAGGAGAAACTTAAGGTTGTTCCTGGTGAAGATGCTTTGAGTCAAGAAGCTCAGAAGAATGCTACTCTTCTGTTCAATATTCTGCTTCGCAGTACTTTTGCCAGTAAAAGGGTCCTGGAAGAATACAGGCTTTCTCGTGAGGCATTTGAGTGGGTAGTGGGAGAAATTGAATCAAGTGCCAAGAATGTCACACTTGGTGTTCCAAGGTTACGAGAAATCATCAATGTGGCAAAGAGGATCAAAACACCTTCTCTGTCTGTGTTCTTGAAACCTGAGGTAGGTAAGACTAAAGAAAGGGCCAAGACTGTGCAGTGTGCTTTAGAATATACCACCCTTAGGAGTGTGACTCAGACTACCGAGGTGTGGTATGATCCTGACCCAATGAAACTGAATTGCGAAATGATGGTGGATAAGAAGTTGAGTATGGCTGACATTGCTGAGAAGATTAACCTTGAATTTGATGATGATTTGACATGCATATTTAATGATGACAATGCTGAAAAACTCATTCTTCGTATCCGTATTATGAATGATGAAGCCCCCAAGGGAGAGATTCAGGATGAATCTGCTGAGGATGATGTTTTCCTAAAGAAAATAGAAGGCAACATGCTGACTGAAATGACCTTGCGAGGTATTCCTGACATCAACAAAGTTTTTATAAAAAATACTAAAGTTCATAAGTTTGACGAAAATGAAGGTTTTAAGTCTCATGAAGAGTGGATGCTTGATACTGAAGGTGTCAACCTTTTAGCTGTTATGTGCCATGAAGATGTTGATGCAACCAGGACCACAAGCAACCATTTGATTGAAGTTATTGAAGTTCTTGGTATTGAGGCTGTCCGTCGGGCTCTTCTGGATGAGTTACGTGTTGTCATTTCCTTTGATGGTTCTTATGTCAATTACAGGCATCTGGCTATTCTCTGTGATACCATGACTTACCGGGGTCATTTGATGGCAATTACACGTCATGGTATCAACAGGAATGATACTGGGCCAATGATGAGATGCTCTTTTGAAGAGACAGTTGATATTCTCCTTGATGCTGCAGTATATGCTGAGACTGATTACTTGAGGGGTGTGACTGAAAATATTATGTTAGGTCAGCTTGCCCCCATTGGCACTGGAGAATGTGCCCTGTATCTGAATGATGACATGCTGAAGAATGCTATTGAGCTCCAGCTACCAAGTTACATGGATGGTCTTGATTTTGGCATGACACCTGCTTGTTCACCAATTTCTGGAACTCCCTATCAGGAAGGTTTGATGTCTCCAAGTTATTTGTTGAGCCCAAATCTACGACTGTCACCAACTACCAATGCCCAGTTTTCTCCTTATGTTGGTGGAATGGCATTTTCGCCTGCTTCATCTCCCGGTTACAGCCCATCATGGCCAGGCTATAGTCCTTCTTCACCTGGTTACAGCCCGACGTCACCTGGTTACAGCCCCACATCACCTGGTTACAGTCCCACGTCACCTGGGTATAGCCCCACATCTCCTACTTACAGCCCTAGCTCTCCAGGGTATAGCCCCACAAGCCCAGCTTATTCACCCACATCCCCAAGCTACAGCCCCACCTCCCCAAGCTACAGCCCAACATCCCCGAGCTACAGCCCAACATCCCCGAGCTACAGCCCTACATCCCCGAGCTACAGCCCTACATCCCCGAGCTACAGCCCCACATCCCAGAGCTACAGCCCCACATCCCCAGCATACAGTCCTACCTCGCCTTCATACAGCCCAACATCACCTTCATACAGCCCAACATCACCTTCATACAGCCCTACCTCACCTTCGTACAGCCCAACATCACCTGCATACTCTCCTACTTCACCTGGCTATAGTCCTACCTCTCCTAGCTACAGCCCTGCTTCACCTAGCTACAATCCACAGTCAGCGATGTATAGTCCTTCACTGGCATATTCACCAAGCAGCCCAAGATTGTCTCCACCAAGTCCATATAGTCCCACATCTCCTAACTACAGCCCATATAATTCTGGTGCAAGTGCTGACTATAGCCCAGGCTCACCAAATTTTAGTCCTAGTACAGGATACTCACCAAGCCAACCTGGCTACTCACCATCATCAACCAGCCAGTACACTCCCCAGACGAGTGACAAGGATGATAGGGGCACTCCCTGA 3525 0.4485 MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTIDRKMKCETCTASMAECLGHFGHLELAKPMFHIGWHNESERGTITPGDTVVRIEKGELLTGTLCKKTLGASTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMEVINQTISQAKEKVKQLTRDAQEKKLEVEPGRTMMDSFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINIYQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRELTPQEFFFHAMGGKEGLIDTAVKTSETGYIQRRLVKAMEDIMCKYDGTNLTVFKYEFDDEKWKPSYTLEEPAEDLKTIIEFRSVFEAEVQKLEADRFQLATEIATTGDSSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQEKLKVVPGEDALSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGEIESSAKNVTLGVPRLREIINVAKRIKTPSLSVFLKPEVGKTKERAKTVQCALEYTTLRSVTQTTEVWYDPDPMKLNCEMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGEIQDESAEDDVFLKKIEGNMLTEMTLRGIPDINKVFIKNTKVHKFDENEGFKSHEEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDYLRGVTENIMLGQLAPIGTGECALYLNDDMLKNAIELQLPSYMDGLDFGMTPACSPISGTPYQEGLMSPSYLLSPNLRLSPTTNAQFSPYVGGMAFSPASSPGYSPSWPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSQSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPASPSYNPQSAMYSPSLAYSPSSPRLSPPSPYSPTSPNYSPYNSGASADYSPGSPNFSPSTGYSPSQPGYSPSSTSQYTPQTSDKDDRGTP 1174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0086 1174 Pfam RNA polymerase Rpb1 C-terminal repeat 964 977 IPR000684 GO:0003677|GO:0006366
Lal15g0086 1174 Pfam RNA polymerase Rpb1 C-terminal repeat 957 970 IPR000684 GO:0003677|GO:0006366
Lal15g0086 1174 Pfam RNA polymerase Rpb1 C-terminal repeat 1041 1054 IPR000684 GO:0003677|GO:0006366
Lal15g0086 1174 Pfam RNA polymerase Rpb1 C-terminal repeat 943 956 IPR000684 GO:0003677|GO:0006366
Lal15g0086 1174 Pfam RNA polymerase Rpb1 C-terminal repeat 1013 1023 IPR000684 GO:0003677|GO:0006366
Lal15g0086 1174 Pfam RNA polymerase Rpb1 C-terminal repeat 992 1005 IPR000684 GO:0003677|GO:0006366
Lal15g0086 1174 Pfam RNA polymerase Rpb1 C-terminal repeat 1069 1082 IPR000684 GO:0003677|GO:0006366
Lal15g0086 1174 Pfam RNA polymerase Rpb1 C-terminal repeat 936 949 IPR000684 GO:0003677|GO:0006366
Lal15g0086 1174 Pfam RNA polymerase Rpb1 C-terminal repeat 1055 1068 IPR000684 GO:0003677|GO:0006366
Lal15g0086 1174 Pfam RNA polymerase Rpb1 C-terminal repeat 929 942 IPR000684 GO:0003677|GO:0006366
Lal15g0086 1174 Pfam RNA polymerase Rpb1 C-terminal repeat 985 998 IPR000684 GO:0003677|GO:0006366
Lal15g0086 1174 Pfam RNA polymerase Rpb1 C-terminal repeat 1027 1040 IPR000684 GO:0003677|GO:0006366
Lal15g0086 1174 Pfam RNA polymerase Rpb1 C-terminal repeat 971 984 IPR000684 GO:0003677|GO:0006366
Lal15g0086 1174 Pfam RNA polymerase Rpb1 C-terminal repeat 950 963 IPR000684 GO:0003677|GO:0006366
Lal15g0086 1174 Pfam RNA polymerase Rpb1 C-terminal repeat 999 1012 IPR000684 GO:0003677|GO:0006366
Lal15g0086 1174 Pfam RNA polymerase Rpb1 C-terminal repeat 978 991 IPR000684 GO:0003677|GO:0006366
Lal15g0086 1174 Pfam RNA polymerase Rpb1, domain 7 590 672 IPR007073 GO:0003677|GO:0003899|GO:0006351
Lal15g0086 1174 ProSitePatterns Eukaryotic RNA polymerase II heptapeptide repeat. 998 1004 IPR000684 GO:0003677|GO:0006366
Lal15g0086 1174 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT 591 936 - -
Lal15g0086 1174 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT 422 520 - -
Lal15g0086 1174 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT 521 590 - -
Lal15g0086 1174 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT 94 360 - -
Lal15g0086 1174 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT 1 94 - -
Lal15g0086 1174 MobiDBLite consensus disorder prediction 1120 1174 - -
Lal15g0086 1174 ProSitePatterns Eukaryotic RNA polymerase II heptapeptide repeat. 991 997 IPR000684 GO:0003677|GO:0006366
Lal15g0086 1174 Gene3D - 292 350 - -
Lal15g0086 1174 MobiDBLite consensus disorder prediction 928 1174 - -
Lal15g0086 1174 MobiDBLite consensus disorder prediction 1105 1119 - -
Lal15g0086 1174 ProSitePatterns Eukaryotic RNA polymerase II heptapeptide repeat. 1061 1067 IPR000684 GO:0003677|GO:0006366
Lal15g0086 1174 ProSitePatterns Eukaryotic RNA polymerase II heptapeptide repeat. 984 990 IPR000684 GO:0003677|GO:0006366
Lal15g0086 1174 Coils Coil 181 208 - -
Lal15g0086 1174 ProSitePatterns Eukaryotic RNA polymerase II heptapeptide repeat. 1047 1053 IPR000684 GO:0003677|GO:0006366
Lal15g0086 1174 Gene3D RNA polymerase II, clamp domain 5 103 IPR044893 -
Lal15g0086 1174 Pfam RNA polymerase Rpb1, domain 5 521 793 IPR007081 GO:0003677|GO:0003899|GO:0006351
Lal15g0086 1174 Pfam RNA polymerase Rpb1, domain 5 313 360 IPR007081 GO:0003677|GO:0003899|GO:0006351
Lal15g0086 1174 ProSitePatterns Eukaryotic RNA polymerase II heptapeptide repeat. 1115 1121 IPR000684 GO:0003677|GO:0006366
Lal15g0086 1174 ProSitePatterns Eukaryotic RNA polymerase II heptapeptide repeat. 1040 1046 IPR000684 GO:0003677|GO:0006366
Lal15g0086 1174 Pfam RNA polymerase Rpb1, domain 3 100 174 IPR007066 GO:0003677|GO:0003899|GO:0006351
Lal15g0086 1174 Gene3D - 795 838 - -
Lal15g0086 1174 Pfam RNA polymerase Rpb1, domain 1 14 98 IPR007080 GO:0003677|GO:0003899|GO:0006351
Lal15g0086 1174 ProSitePatterns Eukaryotic RNA polymerase II heptapeptide repeat. 1054 1060 IPR000684 GO:0003677|GO:0006366
Lal15g0086 1174 CDD RNAP_II_Rpb1_C 504 844 - -
Lal15g0086 1174 Pfam RNA polymerase Rpb1, domain 6 365 520 IPR007075 GO:0003677|GO:0003899|GO:0006351
Lal15g0086 1174 ProSitePatterns Eukaryotic RNA polymerase II heptapeptide repeat. 1075 1081 IPR000684 GO:0003677|GO:0006366
Lal15g0086 1174 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 14 98 - -
Lal15g0086 1174 PRINTS Proline rich extensin signature 937 949 - -
Lal15g0086 1174 PRINTS Proline rich extensin signature 949 970 - -
Lal15g0086 1174 PRINTS Proline rich extensin signature 975 991 - -
Lal15g0086 1174 PRINTS Proline rich extensin signature 992 1009 - -
Lal15g0086 1174 PRINTS Proline rich extensin signature 1010 1035 - -
Lal15g0086 1174 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 103 847 - -
Lal15g0086 1174 PANTHER DNA-DIRECTED RNA POLYMERASE 521 590 IPR045867 GO:0003899|GO:0006351
Lal15g0086 1174 PANTHER DNA-DIRECTED RNA POLYMERASE 422 520 IPR045867 GO:0003899|GO:0006351
Lal15g0086 1174 PANTHER DNA-DIRECTED RNA POLYMERASE 1 94 IPR045867 GO:0003899|GO:0006351
Lal15g0086 1174 PANTHER DNA-DIRECTED RNA POLYMERASE 94 360 IPR045867 GO:0003899|GO:0006351
Lal15g0086 1174 PANTHER DNA-DIRECTED RNA POLYMERASE 591 936 IPR045867 GO:0003899|GO:0006351
Lal15g0086 1174 Pfam RNA polymerase Rpb1, domain 4 200 305 IPR007083 GO:0003677|GO:0003899|GO:0006351
Lal15g0086 1174 MobiDBLite consensus disorder prediction 928 1104 - -
Lal15g0086 1174 Gene3D - 173 291 IPR038120 -
Lal15g0086 1174 ProSitePatterns Eukaryotic RNA polymerase II heptapeptide repeat. 1005 1011 IPR000684 GO:0003677|GO:0006366
Lal15g0086 1174 Gene3D - 589 673 IPR038593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0086 Lal-Chr15 595065 604759 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0086 K03006 - gmx:100812506 1488.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0086 15 595065 604759 Lal23g1492 23 15176876 15185051 LSH