Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lal14g0117 | ATGTCTATCCTTGGCGTGCCCCTTGTCATCTCTTTTCTCAAACCCCATACCTCTCCCTTCTCTCTCCTCCTCCGCCGCCCCACAACCACTTTCCACCATCTCATCCTCCTTCCCCGCCACCGCCGCCGTCAATTCACCACCGCCGCCTCAACCACCTCAGTCAATCCTATCACCCAACCACATAAGGACTCGTCAACAACCCTTACTTTCCAACAAGCCATTCAGCGCCTTCATCAATATTGGGCTTCCGTTGGTTGTTCCATAATGCAATGCAGTAACACTGAGGTTGGAGCTGGTACAATGAATCCTCTTACATATTTAAGGGTTCTTGGTCCAGAACCATGGAATGTTGCGTATGTGGAACCTAGCATTCGCCCTGATGACAGTCGATATGGAGAAAATCCAAATAGGCTCCAAAAACACACTCAATTTCAGGTCATATTGAAGCCTGATCCTGGAAACTCACAGGACCTTTTTATCCGCAGCCTATCAGCTTTAGGTATTGATGTTACTGCACACGATATACGATTTGTGGAGGATAACTGGGAAAGTCCGGTTCTTGGTGCTTGGGGTTTGGGCTGGGAAGTCTGGATGGACGGGATGGAGATTACTCAATTCACATACTTTCAACAGGCTGGAAGCCTTCAGTTATCACCTGTATCTGTAGAAATCACTTATGGACTTGAACGTATCCTCATGTTACTGCAGGGAGTTGATCACTTCAAGAAGATCAAATATTCTGACGGAATTACATACGGAGAGCTGTTCTTGGAGAATGAGAAGGAAATGAGTGCATATTACTTGGAGCATGCCAGTGTTGATCATATTCAGAAACATTTTGATTTCTTTGAGGAGGAAGCTCGTTGCTTACTTTCTTCAGGCCTTGCAATCCCTGCGTATGATCAGCTTCTGAAAACTTCTCATGCTTTTAATATCTTAGACTCCAGAGGCTTTGTTGGGGTAACAGAGCGTGCTCGGTATTTTGGTCGCATGCGCAGTTTAGCTCGTCAATGTGCACAACTTTGGTTGAAGACTAGGGAAATGCTTGGCTTCCCCCTTGGTTTCATCTCTGAACCTGATGAATTTGTATTGCCAAAAGAAGTTTTGGAGGCTTCATGTGAGAAGGTGCATGATCATTCAAGTACATTTGTTCTTGAAATTGGAACCGAGGAGATGCCACCTCATGATGTTGTCGATGCTAGCAAGCAACTTAAAGATTTGTTGCTGCAATTACTTGAAAGGCATAGGTTAAAGCATGGTGATTTGCAAGTTTTTGGCACCCCAAGGAGATTAGTGGTTGCTGTTGAAGATCTTTTTACAAAACAAGCAGAAAAGGAGGTTGAGGTTCGAGGCCCTCCTGTATCAAAAGCATTTGATAACGAAGGAAATCCAACCAAGGCGATCGAGGGTTTTTCCCGCAGATACTCTGTTCCACTGAACTTGGTATACAGAAAGGTCGATGGAAAAACGGAATATGTTTATGCTCGTGTTAAAGAGGCTTCAAGGCATGCTTTAGAGGTTTTATCTGAAGATTTGCCTACTACCATTGCTAAAATTTCATTTCCAAAGACAATGCGTTGGAATTCTCAGGTGATGTTTAGCAGGCCAATCCGTTGGATTTTTGCCCTGCATGGAGATGTAGTGGTCCCATTTATGTTTGCTGGAGTGAAGAGTGGAAACTTATCTTGTGGTCTTCGTAATACATCTTCAGCCATTGTCCAGGTAGAAAGTGCAGAATCTTATTTAGTTACAATGAAAACTGCAGGGGTCAATGTTGTAGTAGAGGACCGTAAGAAAATCATTTTGGAGCAATCTTCTGCATTAGCAAAAAGTGTAAATGGTCAAATTCTTATTCCGAGAGGTTTGCTTGATGAGGTTGTGAATCTTGTTGAGGCACCTATTCCAGTGCTTGGAAGTTTTAAAGAAACCTTCTTACATCTTCCGAAAGATCTTTTGACTATGGTTATGCAAAAGCACCAGAAATATTTTGCTGTCTGCGATGATGATGGAAACTTGTTGCCTTATTTTATCGCTGTTGCGAATGGAGCCATTGATGAAGCTACAGTGAGGAAAGGAAATGAAGCTGTGCTCAGGGCTCGCTATGAAGATGCTAAATTCTTTTATGAGATGGACACTGGAAAAAGGTTTTCAGACTTCCGAGAGCAACTGAAAAACATTCTCTTTCATGAAAAGCTTGGAACAATGCTGGACAAAATTACTCGCATTGAAAGCATGGTTTCTAAGCTAAGTTGTTTGCTGGATATCAGTGGAGATGTCCAACAAATTATCCAGGATGCTGCCTCACTTGCTATGTCTGATCTTGCCACTTCAGTTGTCACTGAATTTACCTCACTTTCAGGAATAATGGGTCGTCACTATGCCCTTAGAGATGGATACTCAGAGCAGATTGCAGAAGCTTTGTTTGAGATCACACTTCCGAGATTTTCCGGAGACATTCTTCCGAAAACTGATGCTGGTGTAGTTTTGGCAATTGCTGATAGATTAGATAGCCTGGTTGGTTTATTTACTGCTGGCTGTCAACCTAGTTCCGCAAATGATCCATTTGGGCTGCGAAGAATCTCTTATGGTCTTGTGCAATTGTTGGTGGAAAAGAATAAAAACCTAGATTTTAAAAAGGCTCTTCAACTTGCTGCTGCTGCCCAGCCCATTAAAGTATCTTCTCATGTAATTGATGATGTACATCAATTTGTGACTAGAAGATTAGAGCAGTTTCTGGTTGACAAGGGGGTGAATACAGAATTTGTTCGTTCCATCCTTGTTGAGAGGGCTAATTTTCCCTGTCTAGCAGCGAAGTCAGCATATAAAATGAAAGAATTATCAAGGGGCAAGATTTTTCCTAAAGTAGTTGAAGCATACTCTCGACCAACAAGAATTGTCCGAGGAAAAGAAGATGAACTTAATATTGAGGTGGATGAGGCTGCTTTTGAGACAAATGAAGAAAGAGTTCTATGGAACACATTTTTGTCAGTTAAAAAGAGTATCATTCCTGGTCAAGAACTTGATGAATTTATTGATATCTCATCCCAGTTAATACAGCCACTTGAGGATTTCTTCAATAATGTATTTGTAATGGTGGATGATGATAAAATCAGAAAAAACAGGCTAGCTCTGCTAAAAGGAATTGCTGAACTTCCTAGAGGAATAGCAGACCTTACAATTCTGCCTGGATTTTAG | 3195 | 0.4194 | MSILGVPLVISFLKPHTSPFSLLLRRPTTTFHHLILLPRHRRRQFTTAASTTSVNPITQPHKDSSTTLTFQQAIQRLHQYWASVGCSIMQCSNTEVGAGTMNPLTYLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQKHTQFQVILKPDPGNSQDLFIRSLSALGIDVTAHDIRFVEDNWESPVLGAWGLGWEVWMDGMEITQFTYFQQAGSLQLSPVSVEITYGLERILMLLQGVDHFKKIKYSDGITYGELFLENEKEMSAYYLEHASVDHIQKHFDFFEEEARCLLSSGLAIPAYDQLLKTSHAFNILDSRGFVGVTERARYFGRMRSLARQCAQLWLKTREMLGFPLGFISEPDEFVLPKEVLEASCEKVHDHSSTFVLEIGTEEMPPHDVVDASKQLKDLLLQLLERHRLKHGDLQVFGTPRRLVVAVEDLFTKQAEKEVEVRGPPVSKAFDNEGNPTKAIEGFSRRYSVPLNLVYRKVDGKTEYVYARVKEASRHALEVLSEDLPTTIAKISFPKTMRWNSQVMFSRPIRWIFALHGDVVVPFMFAGVKSGNLSCGLRNTSSAIVQVESAESYLVTMKTAGVNVVVEDRKKIILEQSSALAKSVNGQILIPRGLLDEVVNLVEAPIPVLGSFKETFLHLPKDLLTMVMQKHQKYFAVCDDDGNLLPYFIAVANGAIDEATVRKGNEAVLRARYEDAKFFYEMDTGKRFSDFREQLKNILFHEKLGTMLDKITRIESMVSKLSCLLDISGDVQQIIQDAASLAMSDLATSVVTEFTSLSGIMGRHYALRDGYSEQIAEALFEITLPRFSGDILPKTDAGVVLAIADRLDSLVGLFTAGCQPSSANDPFGLRRISYGLVQLLVEKNKNLDFKKALQLAAAAQPIKVSSHVIDDVHQFVTRRLEQFLVDKGVNTEFVRSILVERANFPCLAAKSAYKMKELSRGKIFPKVVEAYSRPTRIVRGKEDELNIEVDEAAFETNEERVLWNTFLSVKKSIIPGQELDEFIDISSQLIQPLEDFFNNVFVMVDDDKIRKNRLALLKGIAELPRGIADLTILPGF | 1064 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lal14g0117 | 1064 | Gene3D | Class II aaRS and biotin synthetases; domain 2 | 272 | 351 | - | - | |
| Lal14g0117 | 1064 | SUPERFAMILY | Class II aaRS and biotin synthetases | 69 | 347 | IPR045864 | - | |
| Lal14g0117 | 1064 | Pfam | Glycyl-tRNA synthetase alpha subunit | 70 | 347 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Lal14g0117 | 1064 | SUPERFAMILY | HD-domain/PDEase-like | 710 | 844 | - | - | |
| Lal14g0117 | 1064 | Hamap | Glycine--tRNA ligase alpha subunit [glyQ]. | 68 | 348 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Lal14g0117 | 1064 | ProSiteProfiles | Heterodimeric glycyl-transfer RNA synthetases family profile. | 734 | 1026 | IPR006194 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Lal14g0117 | 1064 | PANTHER | GLYCYL-TRNA SYNTHETASE | 380 | 1064 | IPR015944 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Lal14g0117 | 1064 | Gene3D | Bira Bifunctional Protein; Domain 2 | 57 | 271 | IPR045864 | - | |
| Lal14g0117 | 1064 | Pfam | Glycyl-tRNA synthetase beta subunit | 383 | 926 | IPR015944 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Lal14g0117 | 1064 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 122 | 137 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Lal14g0117 | 1064 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 143 | 163 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Lal14g0117 | 1064 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 174 | 198 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Lal14g0117 | 1064 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 200 | 220 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Lal14g0117 | 1064 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 223 | 238 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Lal14g0117 | 1064 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 308 | 324 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Lal14g0117 | 1064 | Hamap | Glycine--tRNA ligase beta subunit [glyS]. | 380 | 1061 | IPR015944 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Lal14g0117 | 1064 | TIGRFAM | glyS: glycine--tRNA ligase, beta subunit | 380 | 1061 | IPR015944 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Lal14g0117 | 1064 | CDD | GlyRS_alpha_core | 69 | 347 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Lal14g0117 | 1064 | TIGRFAM | glyQ: glycine--tRNA ligase, alpha subunit | 69 | 353 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Lal14g0117 | 1064 | ProSiteProfiles | Heterodimeric glycyl-transfer RNA synthetases family profile. | 69 | 343 | IPR006194 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lal14g0117 | K14164 | - | gmx:100787365 | 1776.14 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lal14g0117 | 14 | 1174974 | 1203932 | Lal14g0117 | 14 | 1174974 | 1203932 | ECH |