Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1059 ATGGGTGGTTCTCAGTTTCTCATACAAATCTCAGCTTTAATATCTTCTGATTCATTAAGATCCTCGAATAACACCCTTTTGAAACCGATCCTAGGATTGCCCGAATTGGAAGTTGCTTCAATCTGTGTGAACCTAACCCTTGTTCTATTGTTTCTCCTTATTGTCTCTATTAGAAGGATTATTGTGTGTGAGGGTCGAATTCGAAGTCGTAATAATAAGGACAATAACATTGGCAATGACAATAATCATAGGATTGTTGTAGAAACATGTGATGTTCGAATCGGTGGAGTGTTTAAGTGGTCATCGTTGTCTTGTTTCTATATTCTGTTGGTTCAGGTTTTTGTGTTGGGATTTGATGGGGTTGCTTTAATTTGGGGTGAGACTAATGGAAATAACAAGAACCATGTGGATTGGTCAGTTCTTATTCTTCCAGCTTCACAGGGTTTAGCTTGGTTTGTTTTAAGCTTGTCTACTTTGCATTGCAAATTCAAAGTGTCAGAGAAGTTCCCATTTTTGTTGAGAATTTGGTGGGTTTTGTCATTTGTCATTTGCTTGTGTACTTTGTATGTTGATGGAAAAGGTTTTTGGGTTGAAGGTTATAATCACTTATGTTCTCATGTTGTTGCTAATTTGGCTGCTACCCCAGCTCTTGCATTTTTGTGTATAGTTGCCATTAGGGGTGTTACTGGCATAGAAGTAATTTGTAGGAACTCTGATCTTCATGAGTTGTTGCTCGGTGAAGAAGAACCAGGTTGTCTTAAGGTTACTCCTTATAGGGATGCTGGACTTTTTAGCTTGGCTACTCTTTCTTGGCTGAATCCACTTCTTTCAATTGGTGCAAAGAGACCACTTGAGCTTAAGGACATTCCCCTTGTTGCACCGAAAGATAGAGCCAAGGCTAGTTATAAGGTTTTGAACTCTAATTGGGAGAGATTGAAGGCTGAGAATCCCTCTAAGCAGCCTTCACTAGCTTGGGCAATTCTGAAGTCATTCTGGAAGGAAGCAGCCGTGAATGCTATCTTTGCTGGTTTGAATACTTTGGTCTCATATGTAGGACCATACATGATAAGTTACTTTGTTGATTACTTGAGTGGTAAAGAGACTTTCCCTAATGAGGGGTATGTCCTCGCGGGTATATTCTTTGTGGCAAAGCTTGTGGAGACCCTGACAACTAGGCAGTGGTATCTAGGAGTTGACATCTTGGGTATGCATGTTAGGTCAGCTCTAACTGCTATGGTATATCGAAAGGGACTCAGACTCTCGAGCTCGGCTAAGCAAAGTCACACAAGTGGGGAGATTGTGAACTACATGGCTGTTGATGTTCAGAGAGTAGGGGACTACTCTTGGTATCTTCATGACATGTGGATGCTTCCCATGCAAATTGTTCTTGCCCTTTTAATTTTGTATAAGAATGTTGGAATTGCTTCTGTTGCCACATTAATTGCGACAATAATTTCCATTGTTGTCACCATTCCCGTGGCTAGGGTACAGGAAGATTATCAAGACAAATTGATGGCTGCTAAGGATGAAAGGATGAGAAAAACATCCGAATGTCTGAGGAATATGAGGATTCTGAAACTGCAAGCTTGGGAACACAGATATCAGCTACAATTGGAGGAAATGCGTGGTGTTGAGTACAAATGGCTTCGGAAAGCCCTTTATTCTCAAGCTTTCATAACTTTCATGTTTTGGAGCTCACCTATATTTGTTTCAGCCGTGACCTTCGCCACTTCCATATTGTTGGGAGGTCAGCTGACAGCAGGTGGTGTCCTTTCTGCTCTAGCTACTTTCAGGATCCTCCAAGAACCTCTGAGAAATTTTCCCGACTTGGTATCAACCATGGCTCAGACAAAAGTTTCCCTTGATCGCTTATCCAGTTTCCTGCAGGACGAAGAATTGCAGGGAGATGCAACAATCATTTTGCCACAAGGCACTTCTGACGTCGCCATAGAAATTAAGGATGGCGTCTTCTCCTGGGACCCTTCTCTGGCAAGGCCTACCCTATCAGGAATACATTTGAAAGCCGAAAGGGGTATGCGTGTGGCTGTTTGTGGCACAGTTGGTTCTGGGAAATCAAGTTTTCTTTCTTGCATCCTTGGAGAGATTCCTAAGCTTTCTGGTGAAGTAAGGGTGTGTGGCTTTTCTGCATATGTCTCCCAATCAGCATGGATACAGTCAGGAAATATAGAAGAAAATATCCTATTTGGAAGCCCAATGGACAAAGTAAAGTACAAGAATGTTCTTCATGCCTGTGCACTGAAAAAGGACCTGAAGCTTTTCTCACATGGAGACCAAACAATTATTGGTGATAGAGGTATAAACCTGAGTGGTGGCCAGAAGCAGCGGGTTCAGCTTGCACGAGCACTCTACCAAGATGCTGATATTTATCTCCTTGATGATCCCTTCAGTGCACTTGATGCCCACACCGGATCAGAATTGTTTAGGGAGTATGTATTGACAGCATTAACAGATAAAACTGTTGTTTTTGTAACCCATCAAGTTGAATTTCTTCCTGCTGCTGATATGATACTGGTTCTTAAGGAAGGCCACATCATACAAGCAGGAAAATATGATGATCTTTTGCAAGCAGGAACAGATTTTAACACTCTAGTTTCAGCTCATCATGAAGCAATAGAGGCTATGGACATTCCTACTCACTCTTCAGAAGATTCGGATGAAAATGTTCCCCTGGATATATCTGTTATGAACTGTAAGAATTCCATTTCTTCTGCAAATGATATTGACAATTTGGCAAAGGAAGTGCAAGAGGGAACATTAGATCAGAAAGCAATTAAGGAGAAGAAGAATGCGAAACGCTCAAGAAAAAAACAGCTTGTTCAGGAAGAGGAGAGGGTTAGAGGTAGAGTCAGCATGAAGGTGTACTTGTCGTACATGGCTGCAGCGTACAAAGGCTTATTGATTCCACTCATAATCATTGCACAAACATTATTTCAGTTCCTTCAGATTGCTAGTAATTGGTGGATGGCTTGGGCAAATCCTCAAACTGAAGGAGACCAACCCAAAGTAACTCCCTCGGTTCTTCTTCTTGTTTACATGGCTCTTGCTTTTGGCAGCTCGTGGTTTATATTTGTAAGGGCTGTTCTGGTGGCTGCATTTGGTCTATCTGCTTCACAGAAGCTATTTTTCAAGATGCTTAGAAGTATTTTCCATGCACCGATGTCTTTCTTTGATTCCACACCGGCCGGAAGGATCTTGAATCGGGTTTCAGTTGATCAAAGTGTTGTGGATCTTGATATTCCTTTTAGACTTGGCGGGTTTGCGTCAACAACAATACAGCTAATTGGCATTGTTGCTGTAATGTCTGAAGTTACATGGCAAGTTTTGCTCCTAGTTGTCCCAATGGCTGTTGCTTGCTTGTGGATGCAGAAATACTACATGTCTTCCTCAAGGGAATTGGTACGTATTGTAAGCATCCAGAAATCTCCAATTATAAATCTTTTTGGTGAATCAATTTCTGGAGCAGCCACCATAAGAGGTTTTGGACAAGAAAAAAGGTTCATGAAGAGAAACCTTTATCTTCTGGATGCTTTTGCACGACCATTTTTCTGCAGTCTTGCAGCTATTGAGTGGCTCTGCCTGCGGATGGAATTACTTTCGACCTTTGTATTTGCTTTCTGCATGGTATTACTTGTGAGCGTTCCCCATGGAAGTATTGACCCCAGCATGGCTGGACTTGCTGTGACATATGGGCTGAATTTAAATGCACGTCTATCACGGTGGATACTTAGCTTTTGCAAACTTGAAAATAAAATTATATCTATTGAGAGAATTTATCAGTACAGCCAAATTCCTAGTGAAGCACCAGCAGTTATTGAAGATTCACGTCCTCCATCCTCATGGCCTGAGAACGGGACAATCCAAATTATTGATTTGAAGGTCCGTTACAAGGAAAGTCTTCCTCTGGTTCTTCATGGAGTATCCTGCACATTTCCTGGTGGGAAGAAGATTGGAATTGTTGGACGTACTGGAAGCGGCAAATCTACTTTGATTCAGGCGTTGTTTCGATTGGTTGAACCATCAACTGGTAGTATCCTTATAGACAACATCAATATTTCAGGAATTGGTCTTCATGACCTTCGAAGCCATCTGAGTATCATACCACAAGATCCGACCTTGTTTGAAGGCACCATCCGAGGCAATCTTGATCCTCTTGAAGAGCACTCAGATAAAGAGGTTTGGGAGGCACTAGACAAGTCTCAGCTGGGAGAGATTATCCGTGAGAAAGAGCAAAAGCTTGATGCACCAGTGCTAGAAAATGGAGATAATTGGAGTGTAGGGCAGCGACAGCTTGTTTCTCTGGGACGAGCTCTACTCAAGCAATCGAAAATACTTGTACTTGATGAAGCAACAGCATCTGTTGACACTGCTACTGACAATCTTATCCAGAAGATTATTCGAGAAGAGTTCAGAGACTGCACTGTGTGCACTATCGCACATCGTATACCTACTGTTATTGACAGTGATCTTGTTCTGGTACTCAGTGATGGTCGAGTAGCAGAGTACGACACCCCATTACGGCTATTAGAGGAAAAGTCATCCATGTTTCTGAAGTTGGTGAGTGAGTATTCATCGCGGTCAAGTGGAATACCTGATTTTTAA 4620 0.4199 MGGSQFLIQISALISSDSLRSSNNTLLKPILGLPELEVASICVNLTLVLLFLLIVSIRRIIVCEGRIRSRNNKDNNIGNDNNHRIVVETCDVRIGGVFKWSSLSCFYILLVQVFVLGFDGVALIWGETNGNNKNHVDWSVLILPASQGLAWFVLSLSTLHCKFKVSEKFPFLLRIWWVLSFVICLCTLYVDGKGFWVEGYNHLCSHVVANLAATPALAFLCIVAIRGVTGIEVICRNSDLHELLLGEEEPGCLKVTPYRDAGLFSLATLSWLNPLLSIGAKRPLELKDIPLVAPKDRAKASYKVLNSNWERLKAENPSKQPSLAWAILKSFWKEAAVNAIFAGLNTLVSYVGPYMISYFVDYLSGKETFPNEGYVLAGIFFVAKLVETLTTRQWYLGVDILGMHVRSALTAMVYRKGLRLSSSAKQSHTSGEIVNYMAVDVQRVGDYSWYLHDMWMLPMQIVLALLILYKNVGIASVATLIATIISIVVTIPVARVQEDYQDKLMAAKDERMRKTSECLRNMRILKLQAWEHRYQLQLEEMRGVEYKWLRKALYSQAFITFMFWSSPIFVSAVTFATSILLGGQLTAGGVLSALATFRILQEPLRNFPDLVSTMAQTKVSLDRLSSFLQDEELQGDATIILPQGTSDVAIEIKDGVFSWDPSLARPTLSGIHLKAERGMRVAVCGTVGSGKSSFLSCILGEIPKLSGEVRVCGFSAYVSQSAWIQSGNIEENILFGSPMDKVKYKNVLHACALKKDLKLFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSALDAHTGSELFREYVLTALTDKTVVFVTHQVEFLPAADMILVLKEGHIIQAGKYDDLLQAGTDFNTLVSAHHEAIEAMDIPTHSSEDSDENVPLDISVMNCKNSISSANDIDNLAKEVQEGTLDQKAIKEKKNAKRSRKKQLVQEEERVRGRVSMKVYLSYMAAAYKGLLIPLIIIAQTLFQFLQIASNWWMAWANPQTEGDQPKVTPSVLLLVYMALAFGSSWFIFVRAVLVAAFGLSASQKLFFKMLRSIFHAPMSFFDSTPAGRILNRVSVDQSVVDLDIPFRLGGFASTTIQLIGIVAVMSEVTWQVLLLVVPMAVACLWMQKYYMSSSRELVRIVSIQKSPIINLFGESISGAATIRGFGQEKRFMKRNLYLLDAFARPFFCSLAAIEWLCLRMELLSTFVFAFCMVLLVSVPHGSIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPSEAPAVIEDSRPPSSWPENGTIQIIDLKVRYKESLPLVLHGVSCTFPGGKKIGIVGRTGSGKSTLIQALFRLVEPSTGSILIDNINISGIGLHDLRSHLSIIPQDPTLFEGTIRGNLDPLEEHSDKEVWEALDKSQLGEIIREKEQKLDAPVLENGDNWSVGQRQLVSLGRALLKQSKILVLDEATASVDTATDNLIQKIIREEFRDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEYDTPLRLLEEKSSMFLKLVSEYSSRSSGIPDF 1539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1059 1539 CDD ABC_6TM_ABCC_D1 337 624 IPR044746 GO:0140359
Lal13g1059 1539 ProSitePatterns ABC transporters family signature. 775 789 IPR017871 GO:0005524
Lal13g1059 1539 Pfam ABC transporter 1310 1458 IPR003439 GO:0005524
Lal13g1059 1539 Pfam ABC transporter 668 802 IPR003439 GO:0005524
Lal13g1059 1539 SUPERFAMILY ABC transporter transmembrane region 973 1273 IPR036640 GO:0005524|GO:0016021
Lal13g1059 1539 CDD ABC_6TM_ABCC_D2 974 1268 IPR044726 GO:0140359
Lal13g1059 1539 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1293 1527 IPR003439 GO:0005524
Lal13g1059 1539 Coils Coil 931 951 - -
Lal13g1059 1539 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1284 1524 IPR027417 -
Lal13g1059 1539 Gene3D - 645 878 IPR027417 -
Lal13g1059 1539 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 976 1246 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal13g1059 1539 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 82 1539 - -
Lal13g1059 1539 SMART AAA_5 1319 1504 IPR003593 -
Lal13g1059 1539 SMART AAA_5 677 858 IPR003593 -
Lal13g1059 1539 Gene3D ABC transporter type 1, transmembrane domain 306 632 IPR036640 GO:0005524|GO:0016021
Lal13g1059 1539 Gene3D ABC transporter type 1, transmembrane domain 935 1274 IPR036640 GO:0005524|GO:0016021
Lal13g1059 1539 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 646 872 IPR027417 -
Lal13g1059 1539 CDD ABCC_MRP_domain2 1291 1511 - -
Lal13g1059 1539 Pfam ABC transporter transmembrane region 339 604 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal13g1059 1539 Pfam ABC transporter transmembrane region 976 1216 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal13g1059 1539 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 82 1539 - -
Lal13g1059 1539 CDD ABCC_MRP_domain1 650 849 - -
Lal13g1059 1539 Gene3D - 1276 1528 IPR027417 -
Lal13g1059 1539 SUPERFAMILY ABC transporter transmembrane region 325 632 IPR036640 GO:0005524|GO:0016021
Lal13g1059 1539 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 650 873 IPR003439 GO:0005524
Lal13g1059 1539 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 339 616 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1059 Lal-Chr13 7834868 7844241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1059 650 866 Calmodulin-binding Proteins AT2G36910 32.203 3.64e-20 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1059 - - gmx:100781010 2598.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1059 13 7834868 7844241 Lal13g1059 13 7834868 7844241 ECH
Lal12g0867 12 7082835 7091746 Lal13g1059 13 7834868 7844241 LSH
Lal1g1871 1 21010200 21018187 Lal13g1059 13 7834868 7844241 PCT
Lal13g1059 13 7834868 7844241 Lal1g1871 1 21010200 21018187 PCT