Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0403 ATGGTTAATGCTATTCACACCGCACATTCTCTCTCTACTCCTTTCTCTTCTTCACTTTCCCTCTCCTCCAACCTCCCTTTCTCCTCCGCCTTCTCCCTCCGTCCCTTCCCCCGCCGCCACCGCTCTCTTGTCTTCATTGTCTCTGCCTCTCTCGACGCCAAGCCTACCGTTCTCGTCGCCGAGAAGCTCGGTGAAGAGGGTCTTAAGCTTCTTAAGGATTTTGCTAACGTGGATTGCTCTTATAATCTAACTCCTGAGGAGCTTTGCAACAAGATCTCAGTGTGCGATGCTCTTATCGTTCGTAGCGGAACAAAAGTCTCACGTGACGTGTTTGAATCTTCCTCTGGAAGATTGAAGGTTGTTGGAAGAGCCGGTGTTGGAATCGACAATGTTGATCTCGCTGCTGCCACTGAGTTTGGTTGCTTGGTCGTTAATGCTCCCACCGCTAACACTGTTGCTGCTGCGGAACATGGTATCGCTCTCTTGGCTGCTATGGCTAGGAATGTTGCTCAGGCCGATGCAACTGTTAAAGCTGGGAAATGGCAGAGGAATAAGTATGTTGGAGTTTCCCTAGTTGGGAAAAGGCTTGCCGTCATGGGATTTGGGAAGGTTGGTACTGAAGTTGCTAGACGTGCAAAGGGGCTTGGTATGCATGTCATTGCACATGACCCATATGCTCCTGCAGATCGTGCTCGTGCAATTGGTGTGGAGCTTGTGGGCTTTGAGGAGGCCATTTCTACTGCAGATTTCATCTCTTTGCACATGCCACTTACACCTGCTACTTCAAAGATTCTTAATGATGAGACTTTTGCAAAGATGAAGAAAGGAGTTCGAATTGTCAATGTTGCTCGTGGAGGAGTCATTGATGAGGATGCTCTTGTTAGGGCACTTGATGCTGGAATTGTAGCTCAGGCTGCACTTGATGTTTTCACTGAGGAGCCACCATCAAAAGACAGCAAGTTGATTATGCATGAGCAAGTTACTGCAACACCTCATCTTGGTGCTAGTACCATGGAAGCCCAAGAAGGTGTTGCTATTGAAATAGCAGAAGCGGTTGTTGGGGCATTGAGAGGGGAGCTTGCTGCTACTGCAGTCAATGCACCAATGGTTCCAGCTGAGATATTAACAGAGTTGAAACCATTTGTTGGTCTTGCTGAGAAATTGGGGAGGCTGGCTGTCCAGTTAGTGTCAGGAGGAAATGGTGTAAAAACGGTTAAAGTGACTTATGCTTCTTCAAGGGCCCCTGATGATCTTGACACTCGTCTTCTTCGTGCTATGATAACCAAGGGTCTGATTGAGCCAATATCCAGTGTTTTCGTGAACTTGGTCAATGCTGATTTTATTGCTAAGCAAAGAGGACTCAGGATAACTGAGGAGAGGGTTATTCTTGATGGTTCACCTGAAAATCCGCTTGAGTACATCCAGGTCCAAATTGATAACGTGGAATCCCGATTTGCTAGTGCTATATCAGATTCTGGGGAGATTAAGGTTGAGGGTCGAGTGAAAGACGGTGTCCCACATCTGACAAAGGTTGGATCTTTTGAAGTTGATGTGAGTTTGGAAGGTAGCATTATACTCTGCAGGCAGGTAGATCAGCCAGGCATGATCGGAAAAGTTGGGAGCGTGTTGGGTCAGGAGAATGTGAATGTCAGCTTTATGAGTGTTGGAAGGATTGCCCCACGCAAGCAAGCTGTAATGGCAATTGGGGTGGATGAACAACCTCGCAAAGAAAGTTTGAAGAAGATTGGAGATATTCCTGCTATTGAAGAGTTCGTTTTTCTGAAGTTGTAA 1791 0.469 MVNAIHTAHSLSTPFSSSLSLSSNLPFSSAFSLRPFPRRHRSLVFIVSASLDAKPTVLVAEKLGEEGLKLLKDFANVDCSYNLTPEELCNKISVCDALIVRSGTKVSRDVFESSSGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADATVKAGKWQRNKYVGVSLVGKRLAVMGFGKVGTEVARRAKGLGMHVIAHDPYAPADRARAIGVELVGFEEAISTADFISLHMPLTPATSKILNDETFAKMKKGVRIVNVARGGVIDEDALVRALDAGIVAQAALDVFTEEPPSKDSKLIMHEQVTATPHLGASTMEAQEGVAIEIAEAVVGALRGELAATAVNAPMVPAEILTELKPFVGLAEKLGRLAVQLVSGGNGVKTVKVTYASSRAPDDLDTRLLRAMITKGLIEPISSVFVNLVNADFIAKQRGLRITEERVILDGSPENPLEYIQVQIDNVESRFASAISDSGEIKVEGRVKDGVPHLTKVGSFEVDVSLEGSIILCRQVDQPGMIGKVGSVLGQENVNVSFMSVGRIAPRKQAVMAIGVDEQPRKESLKKIGDIPAIEEFVFLKL 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0403 596 CDD ACT_3PGDH-xct 525 596 - -
Lal13g0403 596 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 153 335 IPR036291 -
Lal13g0403 596 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 54 187 - -
Lal13g0403 596 SMART AdoHcyase_NAD_2 184 338 IPR015878 -
Lal13g0403 596 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 57 366 IPR006139 GO:0016616|GO:0051287
Lal13g0403 596 Gene3D - 59 359 - -
Lal13g0403 596 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 159 334 IPR006140 GO:0051287
Lal13g0403 596 ProSiteProfiles ACT domain profile. 524 596 IPR002912 -
Lal13g0403 596 PANTHER D-3-PHOSPHOGLYCERATE DEHYDROGENASE 37 591 - -
Lal13g0403 596 Gene3D - 150 332 - -
Lal13g0403 596 Pfam D-3-phosphoglycerate dehydrogenase intervening domain 377 483 IPR045626 -
Lal13g0403 596 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 273 289 IPR029753 -
Lal13g0403 596 TIGRFAM PGDH: phosphoglycerate dehydrogenase 57 595 IPR006236 GO:0004617|GO:0006564
Lal13g0403 596 Gene3D - 371 522 IPR029009 -
Lal13g0403 596 PANTHER FORMATE DEHYDROGENASE 1 37 591 - -
Lal13g0403 596 CDD PGDH_4 57 359 - -
Lal13g0403 596 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 196 223 IPR029752 -
Lal13g0403 596 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 244 266 IPR029753 -
Lal13g0403 596 SUPERFAMILY Serine metabolism enzymes domain 372 518 IPR029009 -
Lal13g0403 596 Gene3D - 523 596 - -
Lal13g0403 596 SUPERFAMILY ACT-like 514 592 IPR045865 -
Lal13g0403 596 Pfam ACT domain 524 586 IPR002912 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0403 Lal-Chr13 2517001 2522161 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0403 K00058 - gmx:100819264 959.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0403 13 2517001 2522161 Lal13g0403 13 2517001 2522161 ECH