LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal13g0249	ATGATGAAGAAACGCCCAATAACAAGCGTCGATGTTGCGGTTGTCGATATCTGGAATCGAGAACTTGGTCACCTTTCCTCTAGAAATTTCGCTCATCGTCTCTCTGCCTCTCAGGATCTTGTTCTTCGACTTGATATACATAGGAAGCTTGAAAAGCACAGAGGTTGTGTAAATACTGTGAGCTTCAATGAAGATGGTGACATTTTGGTCACTGGTTCTGATGATAGGAAGGTTATTCTCTGGGATTGGGAAAATGGGCATACTAAGCTCTCTTTCCATTCTGGTCACACCAACAATGTTTTTCAAGCTAAGTTCATGCCACACTCTGATGATCGAACCATCATCACCTGTGCTGCTGAGGGTCAGGTGAGACAAGCCCAAATTCTCGAAAATGGAGGTGTGGAAACTAAGTTATTGGGAAAGCATGAAGGGCGAGCTCATAAGTTGGCTATTGAACCTGGTAGCCCTCATATATTTTATACTTGTGGTGAAGATGGATTAGTGCAGCATTTTGATCTGAGAACTGGGGCTGCTACAAGGCTTTTCACATGCCAACCAATTAAGGATAGATGGGATTTCAGACCAGTCATCCATCTTAATGCAATTGCAATTGATCCAAGGAACCCAAATCTCTTTGCGGTTGCTGGCGATGATGAGTATGCTCGACTTTATGATATTCGTAAATATAAGTGGGATGGATCAAATGAATTCGGTCAACCGACTGACTTCTTCTGCCCTCCACACTTGATTGGTGATGACCGAGTTGGAATAACAGGGTTGGCATTTTCTGAACAAAGAGAGCTGCTTCTATCATACAATGATGAGTTTATTTACCTTTTTACACAAGATATGGGTTTGGGACCTAACCCTCATCCTGGATCCCCTGTATCCATGAACAGTGATGCAAGCGAAATTGGGGTTAGTCATGACTCTGGAACATCTCCATCTAACATGGACAGTGATGACAAAACCATTCCACAAGTTTTTAAGGGACATAGAAACTGTGAGACAGTGAAGGGAGTTAACTTTTTTGGGCCAAAATGTGAGTATGTGGTGAGTGGATCAGACTGTGGCCGAATTTTTATATGGAGAAAAAAAGATGGACAGCTTATTCGGGTTATGGAAGCAGATAAGCATGTAGTGAACTGCATTGAGTCTCATCCCCATACAATAGTTCTTGCAAGCAGTGGAATTGAGCATGACATAAAGATATGGACTCCAAAGGCACTCCAGAAAGCTATTTTGCCTAAAAATATTGAGCAGGTTGTGGAATCAGCCTCTTGCAAATGCAAGGTTCTCATGTTTGATCAAATTCGTTGGTATGATGATGATGATGATGATGACGACGATGACGATTATGATGATGATGATTTGTTTGAAAATGAATATGATATGTTTGGTGATGATGATGATGACAACGACGATGATGATACTGATGATGATGATAATGAAACTGATGATTGTGATGATTATGACAATGATGACAACAAAGGCGGTGGTGATGATGTTAATACTGATGACAATGGCAACAATGATAATTTTGGTGGTGGTTGTAATGATGCAAATTGTTGA	1572	0.4097	MMKKRPITSVDVAVVDIWNRELGHLSSRNFAHRLSASQDLVLRLDIHRKLEKHRGCVNTVSFNEDGDILVTGSDDRKVILWDWENGHTKLSFHSGHTNNVFQAKFMPHSDDRTIITCAAEGQVRQAQILENGGVETKLLGKHEGRAHKLAIEPGSPHIFYTCGEDGLVQHFDLRTGAATRLFTCQPIKDRWDFRPVIHLNAIAIDPRNPNLFAVAGDDEYARLYDIRKYKWDGSNEFGQPTDFFCPPHLIGDDRVGITGLAFSEQRELLLSYNDEFIYLFTQDMGLGPNPHPGSPVSMNSDASEIGVSHDSGTSPSNMDSDDKTIPQVFKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIWRKKDGQLIRVMEADKHVVNCIESHPHTIVLASSGIEHDIKIWTPKALQKAILPKNIEQVVESASCKCKVLMFDQIRWYDDDDDDDDDDDYDDDDLFENEYDMFGDDDDDNDDDDTDDDDNETDDCDDYDNDDNKGGGDDVNTDDNGNNDNFGGGCNDANC	523

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal13g0249	523	ProSiteProfiles	Trp-Asp (WD) repeats circular profile.	50	82	-	-
	Lal13g0249	523	MobiDBLite	consensus disorder prediction	293	321	-	-
	Lal13g0249	523	MobiDBLite	consensus disorder prediction	444	523	-	-
	Lal13g0249	523	PANTHER	WD REPEAT DOMAIN-CONTAINING FAMILY	7	422	IPR045151	-
	Lal13g0249	523	SMART	WD40_4	132	172	IPR001680	GO:0005515
	Lal13g0249	523	SMART	WD40_4	367	406	IPR001680	GO:0005515
	Lal13g0249	523	SMART	WD40_4	322	364	IPR001680	GO:0005515
	Lal13g0249	523	SMART	WD40_4	85	127	IPR001680	GO:0005515
	Lal13g0249	523	SMART	WD40_4	43	82	IPR001680	GO:0005515
	Lal13g0249	523	SMART	WD40_4	192	225	IPR001680	GO:0005515
	Lal13g0249	523	SUPERFAMILY	WD40 repeat-like	42	405	IPR036322	GO:0005515
	Lal13g0249	523	MobiDBLite	consensus disorder prediction	444	496	-	-
	Lal13g0249	523	ProSiteProfiles	Trp-Asp (WD) repeats profile.	50	91	IPR001680	GO:0005515
	Lal13g0249	523	MobiDBLite	consensus disorder prediction	503	523	-	-
	Lal13g0249	523	PANTHER	WD40/YVTN REPEAT-LIKE-CONTAINING DOMAIN-CONTAINING PROTEIN-RELATED	7	422	-	-
	Lal13g0249	523	MobiDBLite	consensus disorder prediction	289	321	-	-
	Lal13g0249	523	Pfam	WD domain, G-beta repeat	327	363	IPR001680	GO:0005515
	Lal13g0249	523	Pfam	WD domain, G-beta repeat	49	82	IPR001680	GO:0005515
	Lal13g0249	523	Gene3D	-	36	408	IPR015943	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal13g0249	Lal-Chr13	1574471	1583117	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal13g0249	K11804		-	gmx:100794236	747.273

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal13g0249	13	1574471	1583117	Lal13g0249	13	1574471	1583117	ECH