Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0247 ATGGGTACAACACTTCCCTTTCATTACCATCATCACAACCTCTTCCTCAATACCATTACTCCGCATAAACCCACTTCAAAACCTTACAACACCTCTATCACTCACAAACCAAAACTTACCTCTTGTAATCTCACTAGGGGTCTTGTTGAAATTGTGTCTTCTGGGTCCATGCAACATGCACTCAAACTGTTCGATAAAATGCCCCAATCAGACACCTTTATCTGGAATGTCATGATTAGAGGGTACACGGATCATGGGTTTTTTCTAGATGCTATCAACTTGTATCATAGAATGCGATATCAAGGGGTTCGTACTGATAATTTCACATACCCATTTGTGATCAAAGCTTGTGGTGTGTTGTTAGAATTATCAGAAGGGAAAAAGATTCATGGGAACTTGATAAAGCTGGGTTTGGATGCAGATGTTTATATTTGCAATGCAATCATTATTATGTATGGGAAGCTTGGTCACATTGGCTCCGCGTTGAAGGTTTTTGAGGAAATGCCTGTTAGGGACTTGGTTTCATGGAACTCTATCATCACCGCTTATTCTTTGGTCCAACAATATTTGAGCTCAATGGAATGGTTTAGAGAAATGCTGAGACAACAAATTCGGCCTGATAAGTTCAGCTTAATCATTGCTCTCGATGTATGTTCTCTCTGTGTGTATTGTTCGGGAGGGAGAGAAATACATTGCTTTGCTCTAAAATCTGGATTTGCATTAGATATTATGGTTCAGACATCGCTTGTTGACACATATTGCAAGTGTGGGATGCTAAGTTATGCCGAGAGGGTTTTTGACAAGATATGTTTAAGAAATGTTGTGGCTTGGAATGCAATGATTGGTGGATATGCTCTAAATGGCCAACCACTTCGGGCTTTTAGTTCCTTGAAAAAGATGCTCAAGGATGATAACTTGGATGTTGATAATGTCACACTCATAAACCTGCTTCCTTCTTGTGCACAAGTAGGAGCTGTTTTGTTGGGTAAGTCTGTCCATGGCCTTGCCATAAGGAAAGGCTTTCTACCTCATCCAGTATTAGAAACTGCCCTGCTTGACATGTATGGTGAGTTTGGCCTACTGAATTTTGCAGAGCTAATCTTTAATCAAATGACGGATAAGAACTTGATAACGTGGAATGCCATGATTGCTTTATATGTTCAGAAGGGATGGAACGAGAAAGCGTTAAATCTATTTGAAGAACTTCTGAGTGGATATCTTAAACCGGATACAGTTACTATTTCGAGCATCCTTCCTGCCTATGCCAAGTTGGCATCATTAAGAGAATGTAGGCAGATTCATGGTTATGTTATGAAATTGAATTATCACTCAAATTTATTTGTTTCAAATTCGATTATATATATGTATGCAAGTTCTGGAGATCTAGTGACAGCCCGGACATTTTTTGATCAAATGTCTAGTAGGGATATCATATCATGGAATACTATCATTATGGCGTATGCCATTCATGGTATGGGGACAATGTCTATTGAATTGTTTTCTGAGATGAAGGAAAGGGGCTTTCAGCCAAATGGTAGCACCTTTGTTTCACTGTTAACATCTTGTAGCAATTCTGGCATGGTTAACAAAGGGTGGGCATACTATAATTTGATGAAACAAGACTATGGAATAGAGCCTCAAATAGAGCATTATGGATGTATTCTCGATCTTATTGGTAGAACTGGTAACTTGGACCAAGCTATGAGCTTTATAGAAGAAATGCCACTGTTGCCTACAGCACGGATATGGGGATCATTACTGAATGCATGTAGAAACAAAGGAAACATAGAATTAGCCGAACTTGCTGCCGAGCGTATCATGTCAATAAGGCATGATAATACTGGGTGTTATGTCTTACTTTCTAACTTGTATGCTGAAGCTGGGAGGTGGGAGAATTCAGAACACATAAAATCTATCATGAAGAAAGCCGGAATAGAGAAAACTCTAGCTTGCAGCACAGTACATACCGTATTTAGGTTGCATAGATTTGTTAATCAGGACAGATCTCATATGGAGTCTGACATGATTTATAATGTTCTAGGTATCATCATATCAAGGAATCCTGGCCATAGTAAATGTGAAGAATATGTTAAAAAGTTCAAGCCCTCAGACTTGGTTAGAATAAAAGCAAATTTACCGGAGAACCATAGCATAAGATTGGCAGTGTGTTTTGGACTCATCTCTACTGCACTTGGAAATCCGGTTCTTGTCAGGAAGAACACAAGAATATGTGAAGATTGCCATATTGTTGTAAAGAGGATTTCAGAGATTACTAAGAGTGAAATAATTGTAGGAGATTCCAAAGTCTTCCACCACTTCAGAGACGGGCACTGCTCTTGTGGTGATTACTGGTAA 2355 0.3907 MGTTLPFHYHHHNLFLNTITPHKPTSKPYNTSITHKPKLTSCNLTRGLVEIVSSGSMQHALKLFDKMPQSDTFIWNVMIRGYTDHGFFLDAINLYHRMRYQGVRTDNFTYPFVIKACGVLLELSEGKKIHGNLIKLGLDADVYICNAIIIMYGKLGHIGSALKVFEEMPVRDLVSWNSIITAYSLVQQYLSSMEWFREMLRQQIRPDKFSLIIALDVCSLCVYCSGGREIHCFALKSGFALDIMVQTSLVDTYCKCGMLSYAERVFDKICLRNVVAWNAMIGGYALNGQPLRAFSSLKKMLKDDNLDVDNVTLINLLPSCAQVGAVLLGKSVHGLAIRKGFLPHPVLETALLDMYGEFGLLNFAELIFNQMTDKNLITWNAMIALYVQKGWNEKALNLFEELLSGYLKPDTVTISSILPAYAKLASLRECRQIHGYVMKLNYHSNLFVSNSIIYMYASSGDLVTARTFFDQMSSRDIISWNTIIMAYAIHGMGTMSIELFSEMKERGFQPNGSTFVSLLTSCSNSGMVNKGWAYYNLMKQDYGIEPQIEHYGCILDLIGRTGNLDQAMSFIEEMPLLPTARIWGSLLNACRNKGNIELAELAAERIMSIRHDNTGCYVLLSNLYAEAGRWENSEHIKSIMKKAGIEKTLACSTVHTVFRLHRFVNQDRSHMESDMIYNVLGIIISRNPGHSKCEEYVKKFKPSDLVRIKANLPENHSIRLAVCFGLISTALGNPVLVRKNTRICEDCHIVVKRISEITKSEIIVGDSKVFHHFRDGHCSCGDYW 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0247 784 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 172 206 IPR002885 -
Lal13g0247 784 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 242 276 IPR002885 -
Lal13g0247 784 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 50 778 - -
Lal13g0247 784 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 375 409 IPR002885 -
Lal13g0247 784 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 141 171 IPR002885 -
Lal13g0247 784 Gene3D Tetratricopeptide repeat domain 450 674 IPR011990 GO:0005515
Lal13g0247 784 Gene3D Tetratricopeptide repeat domain 39 126 IPR011990 GO:0005515
Lal13g0247 784 Gene3D Tetratricopeptide repeat domain 127 221 IPR011990 GO:0005515
Lal13g0247 784 Gene3D Tetratricopeptide repeat domain 228 325 IPR011990 GO:0005515
Lal13g0247 784 Gene3D Tetratricopeptide repeat domain 326 435 IPR011990 GO:0005515
Lal13g0247 784 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 476 510 IPR002885 -
Lal13g0247 784 PANTHER BNAANNG11600D PROTEIN 50 778 - -
Lal13g0247 784 Pfam PPR repeat 275 303 IPR002885 -
Lal13g0247 784 Pfam PPR repeat 174 202 IPR002885 -
Lal13g0247 784 Pfam PPR repeat 144 171 IPR002885 -
Lal13g0247 784 Pfam PPR repeat 247 272 IPR002885 -
Lal13g0247 784 Pfam DYW family of nucleic acid deaminases 709 784 IPR032867 GO:0008270
Lal13g0247 784 Pfam E motif 595 654 IPR046848 -
Lal13g0247 784 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 71 105 IPR002885 -
Lal13g0247 784 TIGRFAM PPR: pentatricopeptide repeat domain 74 99 IPR002885 -
Lal13g0247 784 TIGRFAM PPR: pentatricopeptide repeat domain 143 173 IPR002885 -
Lal13g0247 784 TIGRFAM PPR: pentatricopeptide repeat domain 514 546 IPR002885 -
Lal13g0247 784 TIGRFAM PPR: pentatricopeptide repeat domain 174 207 IPR002885 -
Lal13g0247 784 TIGRFAM PPR: pentatricopeptide repeat domain 478 511 IPR002885 -
Lal13g0247 784 Pfam PPR repeat family 374 423 IPR002885 -
Lal13g0247 784 Pfam PPR repeat family 71 117 IPR002885 -
Lal13g0247 784 Pfam PPR repeat family 476 523 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0247 Lal-Chr13 1568515 1570869 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0247 54 784 Glycoside Hydrolase AT3G49170 32.167 4.42e-133 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0247 - - aip:107619622 1165.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0247 13 1568515 1570869 Lal13g0247 13 1568515 1570869 ECH