Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0225 ATGTTTCTCACAAGAACTGAGTATGACCGAGGAGTCAACACCTTTTCTCCCGAGGGACGTTTGTTTCAGGTAGAATATGCAATCGAAGCCATTAAGCTGGGATCAACTGCAATTGGATTGAAGACGAAAGAGGGTGTTGTTCTTGCCGTCGAAAAGCGTATCACTTCACCCCTGCTGGAGCCTAGCAGTGTGGAGAAGATTATGGAAATTGATGACCATATAGGTTGTGCAATGAGTGGATTGATTGCTGATGCTCGAACACTTGTTGAACATGCACGAGTGGAAACTCAGAACCACAGGTTCTCCTTTGGTGAACCAATGACTGTGGAGTCTACAACTCAAGCTCTATGTGATCTAGCCCTGCGTTTTGGTGAAGGCGATGAAGAGTCCATGTCTCGACCATTTGGAGTGTCGCTTCTCATTGCTGGCCATGATGAGAACGGACCTAGTTTATATTACACTGATCCATCTGGTACGTTTTGGCAATGTAATGCAAAAGCCATTGGATCAGGGTCGGAAGGTGCAGACAGTTCTCTGCAAGAACAATACAACAAGCTTGCAATAGTGGAGTGTAGCTTGTTTTCGGCCCTTCCCCGCAATGCCACAGTGGAAAGCGGTGCAGATGGCCGTAGTGCCTGTAACAGGTCAAATAGTGGCAGAATCGCAGGTTGTAAACTACTTATATATTTATTCTTAGTTGTAGCGGTTGTCCCACTACCCGTTATAGAACTAACTCTTCAAGAAGCTGAGACAATTGCTTTATCCATTCTGAAGCAAGTTATGGAAGAGAAGGTGACTCCTAATAACGTTGACATTGCCAAGGTGGCTCCAACATACCATCTTTACACCCCTTCTGAAGTCGAAGCTGTGATAAGTCGTCTATGA 885 0.4531 MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDDHIGCAMSGLIADARTLVEHARVETQNHRFSFGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKLAIVECSLFSALPRNATVESGADGRSACNRSNSGRIAGCKLLIYLFLVVAVVPLPVIELTLQEAETIALSILKQVMEEKVTPNNVDIAKVAPTYHLYTPSEVEAVISRL 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0225 294 Pfam Proteasome subunit A N-terminal signature 8 30 IPR000426 GO:0006511|GO:0019773
Lal13g0225 294 Pfam Proteasome subunit 31 185 IPR001353 GO:0005839|GO:0051603
Lal13g0225 294 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 4 291 IPR029055 -
Lal13g0225 294 ProSitePatterns Proteasome alpha-type subunits signature. 8 30 IPR000426 GO:0006511|GO:0019773
Lal13g0225 294 SMART Proteasome_A_N_2 8 30 IPR000426 GO:0006511|GO:0019773
Lal13g0225 294 ProSiteProfiles Proteasome alpha-type subunit profile. 23 291 IPR023332 -
Lal13g0225 294 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 1 294 IPR029055 -
Lal13g0225 294 PANTHER PROTEASOME SUBUNIT ALPHA/BETA 1 190 - -
Lal13g0225 294 PANTHER PROTEASOME SUBUNIT ALPHA/BETA 243 294 - -
Lal13g0225 294 CDD proteasome_alpha_type_5 8 275 IPR033812 GO:0019773|GO:0043161
Lal13g0225 294 PANTHER PROTEASOME SUBUNIT ALPHA TYPE 243 294 - -
Lal13g0225 294 PANTHER PROTEASOME SUBUNIT ALPHA TYPE 1 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0225 Lal-Chr13 1426657 1431337 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0225 K02729 - ming:122070843 400.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0225 13 1426657 1431337 Lal13g0225 13 1426657 1431337 ECH
Lal12g0257 12 1828232 1832597 Lal13g0225 13 1426657 1431337 LSH