Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lal13g0052 | ATGATTCTGTCTTTGCCTCTTACTCTGAGATTCTCTTCTTCTCTTCCTATTGTACGCCGTGGCAGCCGCTATGGATTCTATCTCCGTCATCCTCCACTTCGCGCAACCTTTTCTGCGGCAGCGCCGGAGACTCATAACTCCTCGAAAAAACAGGAGAAATTGATAACACCAAGATCACAGGACTTCAATGCTTGGTATCTCGATATCATTTCCAACGCGGAACTTGCCGATTATGGTCCTGTTCGTGGCACCATGGTTATTCGTCCCTACGGTTATGCTATTTGGGAATCCATTCAGGATTATTTAAACCGAAAGTTCAAGGACACTGGCCATAGTAATATGTATTTTCCACAATTTATTCCATACTCGTTTATTGAGAAAGAAGCAAGTCACGTGGAGGGTTTCAGTCCCGAGTTAGCACTAGTTACGATTGGGGGTGGAAAGGAACTTGAAGAGAAGCTCGTGGTTCGGCCTACAAGTGAAACCATTGTGAATCACATGTTCACTCAATGGATCAATAGTTACCGTGATCTCCCTCTCCTGATTAACCAGTGGGCAAATGTCACAAGATGGGAGATGCGCACTAAACCTTTTGTGAGGACTCTTGAATTTCTTTGGCAAGAGGGCCATACCGCTCATGCAACTCCTGAAGAGGCAGAAAATGAGGCTATACAGATGATTGACATCTATACCAAATTTGCTTATGAGCAAGCTGCAATACCTGTTATTGCAGGTCGAAAATCTAAAGTAGAAACCTTTGCTGGTGCTTGTAAAACCTATACAATTGAGGCCATGATGGGTGACAAGAAAGCATTACAAGCAGGAACCAGCCACAATCTTGGCCAAAACTTTTCCCGTGCCTTTGGGACACAGTTCTTAGATGAAAATGGACAAAGGCAACATGTTTGGCAGACATCATGGGCGATCAGTACGCGTTTCATTGGAGGTATTATCATGACCCATGGAGATGATGCAGGCCTAATGCTTCCACCAAAGGTTGCTCCTGTACAGGTGGTAATTGTGCCTATTTGGAAGAAAGATGATGAAAAAATGGCAGTTCTAAAGGCTACATCATCTGTAAAAGAAACTCTTCAAGCTGCAGGTATTAGAGTTAAACTTGATGACTCGGATCAAAGAACCCCTGGATGGAAATTCAATTTCTGGGAGATGAAGGGAGTTCCTCTTAGAATTGAAATTGGTCCTCGTGATGTGTCTAGTGGAAGTGTGGTGATATCCAGGAGAGATGTTCCTGGAAAGCAGGGGAAAGTGTTTGGAGTCTCTATGGAGCCTCCAATTTTGGAAGCTTTTGTGAAAGACAATTTGGATGCGATACAGTCCTCTCTTTTGGAAAGGGCAATAGCATTTAGAGACAGCAATATTGTAGATGTGAGCTCATACGATGATCTTAAAGCGGCAATATCACAAGGCAAATGGGCAAGGGGGCCTTGGTCTGCTAGCAATGAAGATGAGTTAAAAGTAAAAGAGGAAACAGGAGCTACTATCAGATGTTTTCCTTTCGAACAGCCACAAGGGACTAAACGGTGCTTGATGACTGGAGATCCGGCTGAAGAAGTAGCAATTTTTGCCAAATCTTACTAA | 1599 | 0.4359 | MILSLPLTLRFSSSLPIVRRGSRYGFYLRHPPLRATFSAAAPETHNSSKKQEKLITPRSQDFNAWYLDIISNAELADYGPVRGTMVIRPYGYAIWESIQDYLNRKFKDTGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWINSYRDLPLLINQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAENEAIQMIDIYTKFAYEQAAIPVIAGRKSKVETFAGACKTYTIEAMMGDKKALQAGTSHNLGQNFSRAFGTQFLDENGQRQHVWQTSWAISTRFIGGIIMTHGDDAGLMLPPKVAPVQVVIVPIWKKDDEKMAVLKATSSVKETLQAAGIRVKLDDSDQRTPGWKFNFWEMKGVPLRIEIGPRDVSSGSVVISRRDVPGKQGKVFGVSMEPPILEAFVKDNLDAIQSSLLERAIAFRDSNIVDVSSYDDLKAAISQGKWARGPWSASNEDELKVKEETGATIRCFPFEQPQGTKRCLMTGDPAEEVAIFAKSY | 532 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lal13g0052 | 532 | SMART | ProRS_C_1_2 | 466 | 532 | IPR016061 | GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Lal13g0052 | 532 | SUPERFAMILY | Class II aaRS and biotin synthetases | 61 | 324 | IPR045864 | - | |
| Lal13g0052 | 532 | PRINTS | Prolyl-tRNA synthetase signature | 113 | 131 | IPR002316 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Lal13g0052 | 532 | PRINTS | Prolyl-tRNA synthetase signature | 154 | 165 | IPR002316 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Lal13g0052 | 532 | PRINTS | Prolyl-tRNA synthetase signature | 184 | 192 | IPR002316 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Lal13g0052 | 532 | PRINTS | Prolyl-tRNA synthetase signature | 193 | 204 | IPR002316 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Lal13g0052 | 532 | PANTHER | BNAC09G28510D PROTEIN | 23 | 532 | - | - | |
| Lal13g0052 | 532 | CDD | ProRS_anticodon_zinc | 326 | 532 | - | - | |
| Lal13g0052 | 532 | Hamap | Proline--tRNA ligase [proS]. | 55 | 532 | IPR004499 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Lal13g0052 | 532 | PANTHER | PROLYL-TRNA SYNTHETASE | 23 | 532 | IPR004499 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Lal13g0052 | 532 | Pfam | tRNA synthetase class II core domain (G, H, P, S and T) | 149 | 318 | IPR002314 | GO:0000166|GO:0004812|GO:0005524|GO:0006418 | |
| Lal13g0052 | 532 | Pfam | Prolyl-tRNA synthetase, C-terminal | 466 | 532 | IPR016061 | GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Lal13g0052 | 532 | Pfam | Anticodon binding domain | 337 | 417 | IPR004154 | - | |
| Lal13g0052 | 532 | SUPERFAMILY | Class II aaRS ABD-related | 326 | 458 | - | - | |
| Lal13g0052 | 532 | SUPERFAMILY | C-terminal domain of ProRS | 460 | 532 | IPR017449 | GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Lal13g0052 | 532 | Gene3D | - | 331 | 454 | IPR036621 | - | |
| Lal13g0052 | 532 | ProSiteProfiles | Aminoacyl-transfer RNA synthetases class-II family profile. | 82 | 330 | IPR006195 | - | |
| Lal13g0052 | 532 | TIGRFAM | proS_fam_I: proline--tRNA ligase | 56 | 532 | IPR004499 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Lal13g0052 | 532 | Gene3D | Bira Bifunctional Protein; Domain 2 | 49 | 330 | IPR045864 | - | |
| Lal13g0052 | 532 | Gene3D | - | 461 | 532 | IPR017449 | GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Lal13g0052 | 532 | CDD | ProRS_core_arch_euk | 61 | 320 | IPR033721 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lal13g0052 | Lal-Chr13 | 341643 | 346355 | Dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lal13g0052 | K01881 | - | gmx:100788013 | 920.228 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lal13g0052 | 13 | 341643 | 346355 | Lal13g0052 | 13 | 341643 | 346355 | ECH |