Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0039 ATGGTGTCAGATTATGATTCAAATTTGGATGAAAACGATAGGTTTCATTCTGATGAGGATTGGAGCTGTAACCAAAAACAATATTATTCACTTAGAAAAGGGTTTTTAGATACTGTGAAGTTAGATGCTAAGAAGGTCCTTGAGGTTCTTCGGCAAGATGGTCCCGGCCTTGATGCAAGGTCGGTTTTAGATGAGTTACATATAAGACCATCGGGGATTCTTGTGAGAGAAGTTCTATTTGGAATATTGAAGAGCATAAATGGAGAGAATAAGACGAGGTGTGCAAAGTTGGCATATAAGTTTTTCACATGGTGTAATCAGCAGGAGAGTTACCAAGACACCGCGAATGGTTATCACTTAATTATGAACATATATGCTCAATGTGAAGAGTTTAAGGCTTTGTGGAGGTTGGTTGATGAGATGATTGAGAAAGGGTTCCCAACCAGTGCTCGTACTTTCAATATTTTGATTCGAACTTGTGGTGAGGCAGGATTGGCTAAGAAATTGGTGGAAAGGTTCATAAAATCGAAGACGTTTAACTATAGGCCTTTTAAGCACTCCTACAATGCAATTCTCCATGGTCTTCTAGTTTTAAAGCAGTACAAGTTGATTGAGTGGGTTTATCAACAGATGTTGCTAGAGGGTTTTTCCCCGGATGTCTTAACTTATAATATTGTCATGTATGCCAAGTACAGACTTGGGAACTTGGATCAGTTTCACAGACTGCTTGATGAGATGGGTGGAAATGGATTTTCTCCAGATTTTCATACGTACAACATTCTTCTTCATGTTCTTGGTAAAGGAGACAAACCGCTTGCGGCTCTTAATCTTTTAAATCACATGAGAGAAACAGGCATTGAGCCTGCTGTACTTCATTTCACCACTTTGATAGATGGGCTCAGCAGGGCTGGGAATCTGGATGCTTGCAAATATTTTTTTGATGAGATGATACAGAATGGGTGCATGCCAGATGTGGTGGCTTACACTGTAATGATTACAGGATATATAGTGGCTGGTGAGCTTGAGAAAGCTCAGGAATTGTTTCATGAGATGATTTTTAGAGAACAGGTTCCAAATGTGTTCACATATAATTCCATGATTCATGGATTATGTATGGCAGGAAAGTTTGATGAAGCATGCTCTATGCTCAAGGACATGGAGACCAGAGGTTGTAGCCCAAACTTTGTTGTCTATAACTCGTTAGTGCGTAGTTTACGGAGTGCTGGAAAGATTGCTGATGCTCATGAAGTGATACAACAGATGAATGAGAAGGGGAAGTATGCCCACCTACTTTCTAGGTTTAAAGGGTATAAGGTATAG 1320 0.3985 MVSDYDSNLDENDRFHSDEDWSCNQKQYYSLRKGFLDTVKLDAKKVLEVLRQDGPGLDARSVLDELHIRPSGILVREVLFGILKSINGENKTRCAKLAYKFFTWCNQQESYQDTANGYHLIMNIYAQCEEFKALWRLVDEMIEKGFPTSARTFNILIRTCGEAGLAKKLVERFIKSKTFNYRPFKHSYNAILHGLLVLKQYKLIEWVYQQMLLEGFSPDVLTYNIVMYAKYRLGNLDQFHRLLDEMGGNGFSPDFHTYNILLHVLGKGDKPLAALNLLNHMRETGIEPAVLHFTTLIDGLSRAGNLDACKYFFDEMIQNGCMPDVVAYTVMITGYIVAGELEKAQELFHEMIFREQVPNVFTYNSMIHGLCMAGKFDEACSMLKDMETRGCSPNFVVYNSLVRSLRSAGKIADAHEVIQQMNEKGKYAHLLSRFKGYKV 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0039 439 Pfam PPR repeat 293 321 IPR002885 -
Lal13g0039 439 Pfam PPR repeat 118 146 IPR002885 -
Lal13g0039 439 Pfam PPR repeat 187 216 IPR002885 -
Lal13g0039 439 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 21 438 - -
Lal13g0039 439 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 359 393 IPR002885 -
Lal13g0039 439 Pfam PPR repeat 389 421 IPR002885 -
Lal13g0039 439 PANTHER OS10G0506000 PROTEIN 21 438 - -
Lal13g0039 439 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 254 288 IPR002885 -
Lal13g0039 439 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 324 358 IPR002885 -
Lal13g0039 439 Pfam PPR repeat family 218 265 IPR002885 -
Lal13g0039 439 Pfam PPR repeat family 323 371 IPR002885 -
Lal13g0039 439 Gene3D Tetratricopeptide repeat domain 17 170 IPR011990 GO:0005515
Lal13g0039 439 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 394 428 IPR002885 -
Lal13g0039 439 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 219 253 IPR002885 -
Lal13g0039 439 Gene3D Tetratricopeptide repeat domain 171 311 IPR011990 GO:0005515
Lal13g0039 439 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 289 323 IPR002885 -
Lal13g0039 439 TIGRFAM PPR: pentatricopeptide repeat domain 256 288 IPR002885 -
Lal13g0039 439 TIGRFAM PPR: pentatricopeptide repeat domain 222 254 IPR002885 -
Lal13g0039 439 TIGRFAM PPR: pentatricopeptide repeat domain 186 220 IPR002885 -
Lal13g0039 439 TIGRFAM PPR: pentatricopeptide repeat domain 326 360 IPR002885 -
Lal13g0039 439 TIGRFAM PPR: pentatricopeptide repeat domain 361 394 IPR002885 -
Lal13g0039 439 TIGRFAM PPR: pentatricopeptide repeat domain 396 425 IPR002885 -
Lal13g0039 439 TIGRFAM PPR: pentatricopeptide repeat domain 293 325 IPR002885 -
Lal13g0039 439 Gene3D Tetratricopeptide repeat domain 312 436 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0039 Lal-Chr13 261413 262732 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0039 187 425 Glycosyltransferase AT1G05670 33.054 6.81e-39 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0039 - - gmx:100792512 741.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0039 13 261413 262732 Lal13g0039 13 261413 262732 ECH