Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0023 ATGGCTTTCTCTTGTAGCCTTCAAAATTTGATCTTTTCTACATTTCAACCCCATAACTCCATTGTTCCATCCTTATCAGTATCAACCCTACTTTTCTCACGCCCCTCTTCTTCCAAGCTTTCACTCAGAATCAGGTTCACTCCAACTCCATCTTCAACTATCAGAGCCTCCTCATCTTCTTCCACAATCATTGCCGAACCTGAAGGCATTAAGATTATCTCCATTCCAACGAAACCCATCCAAGGACAAAAGACTGGTACCAGTGGTCTTCGAAAGAAGGTGAAAGTGTTTCAGCAAGAAAATTACCTTGCAAATTGGATCCAGGCACTGTTTAATTCACTGCCTCCAGAAGATTACAAGAATGGTTTGTTGGCATTGGGAGGTGATGGTCGGTACTTCAATAGGGAAGCTGCTCAGATAATAATCAAAATTGCTGCTGGGAATGGTGTTGGAAAAATTCTTGTTGGAAAGGAAGGTATATTGTCGACACCTGCTGTTTCTGCTGCAAATGGTGGATTTATCATGAGTGCGAGCCATAATCCCGGGGGCCCTGAATATGATTGGGGTATTAAGTTTAATTACAGTAGTGGGCAACCTGCACCAGAATCCATCACTGACAAGATTTATGGAAACACCCTATCTATATCTGAGATAAGGATTGCTGACATTCCTGATGTCGACTTATCGAATGTTGGGGTTACTAAGTTTGGAAGCTTTAGCGTGGAAGTAATAGATCCAGTCTCTGACTATTTGGAGTTATTGGAGTCAGTATTTGATTTTCACCTAATCAAAGGTCTCATATCACGGTCAGATTTTAGGTTCATATTTGATGCCATGCATGCTGTTACTGGTGCTTATGCAAAACCTATCTTCGTCGATGAACTTGGCGCAAGTTTGGACTCAATTACAAATGGAATCCCTTTGGAAGATTTTGGACATGGTCATCCAGACCCTAATCTCACATATGCAAAAGATCTTGTCAACATTCTGTATGCTGAAAATGGACCTGATTTTGGAGCTGCCAGTGATGGTGATGGTGATAGAAATATGATTTTAGGAAGAAGTTTCTTTGTAACGCCTTCAGACTCTGTAGCACTTATTGCAGCCAATGCAAGTGAAACAATTCCGTACTTCAAGACCGGTGTTAAGGGTCTTGCTCGATCAATGCCAACAAGTGGTGCTCTAGACCGTGTTGCCCAAAAATTGAACCTCCCTTTCTTTGAGGCATGTTTTACTTATTTCTTTACAATTTATATTTTCTTTAAAAGATTGAAGATGAAGGTGGTTTATATATATCAAATAATAAAATATGGAGCTTGGATTCAGGTTCCCACTGGTTGGAAATTTTTTGGGAATCTGATGGATGCTGGAAATTTGTCAATTTGCGGGGAAGAGAGTTTTGGAACAGGTTCTGACCACATTCGTGAGAAGGATGGAATCTGGGCTGTATTAGCTTGGCTTTCTATTATAGCATACCGCAACAAAGACACAAAACCAGGGGAGAAATTAATCTCTGTATCTGATGTTGTGAAAGAGCACTGGGCAACCTATGGAAGGAATTTTTTCTCTAGATATGACTACGAGGAATGTGAATCTGAAGGTGCGAATAAGATGATAGAATATCTACGAGAGAGAGTGTCTAAGAGCAAGGCTGGTGATAAGTATGGAAGTTATGTCCTCCAGTTTGCAGATGATTTTACGTACACCGATCCTGTAGATGGAAGTGTGGTATCTAAACAAGGGGTTCGGTTTGTTTTTACAGATGGTTCTAGGATTATATATCGTTTATCAGGAACAGGTTCTGCGGGTGCAACTGTTAGAGTTTACATTGAACAATTTGAAGCAGATGTCTCTAAACATGACCTTGATGCCCAAGTTGCCTTAAAACCATTGATAGATTTAGCATTATCAGTGTCAAAGCTCAAAGACTTCACAGGGAGGGAGGAACCTACAGTCATCACATGA 1965 0.4056 MAFSCSLQNLIFSTFQPHNSIVPSLSVSTLLFSRPSSSKLSLRIRFTPTPSSTIRASSSSSTIIAEPEGIKIISIPTKPIQGQKTGTSGLRKKVKVFQQENYLANWIQALFNSLPPEDYKNGLLALGGDGRYFNREAAQIIIKIAAGNGVGKILVGKEGILSTPAVSAANGGFIMSASHNPGGPEYDWGIKFNYSSGQPAPESITDKIYGNTLSISEIRIADIPDVDLSNVGVTKFGSFSVEVIDPVSDYLELLESVFDFHLIKGLISRSDFRFIFDAMHAVTGAYAKPIFVDELGASLDSITNGIPLEDFGHGHPDPNLTYAKDLVNILYAENGPDFGAASDGDGDRNMILGRSFFVTPSDSVALIAANASETIPYFKTGVKGLARSMPTSGALDRVAQKLNLPFFEACFTYFFTIYIFFKRLKMKVVYIYQIIKYGAWIQVPTGWKFFGNLMDAGNLSICGEESFGTGSDHIREKDGIWAVLAWLSIIAYRNKDTKPGEKLISVSDVVKEHWATYGRNFFSRYDYEECESEGANKMIEYLRERVSKSKAGDKYGSYVLQFADDFTYTDPVDGSVVSKQGVRFVFTDGSRIIYRLSGTGSAGATVRVYIEQFEADVSKHDLDAQVALKPLIDLALSVSKLKDFTGREEPTVIT 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0023 654 Gene3D - 72 253 - -
Lal13g0023 654 PANTHER PHOSPHOHEXOMUTASE FAMILY MEMBER 39 413 IPR045244 GO:0004614|GO:0005975
Lal13g0023 654 PANTHER PHOSPHOHEXOMUTASE FAMILY MEMBER 441 654 IPR045244 GO:0004614|GO:0005975
Lal13g0023 654 Gene3D - 500 654 - -
Lal13g0023 654 SUPERFAMILY Phosphoglucomutase, first 3 domains 74 278 IPR016055 GO:0005975|GO:0016868
Lal13g0023 654 SUPERFAMILY Phosphoglucomutase, C-terminal domain 519 654 IPR036900 GO:0016868|GO:0071704
Lal13g0023 654 PANTHER PHOSPHOGLUCOMUTASE, CHLOROPLASTIC 39 413 - -
Lal13g0023 654 PANTHER PHOSPHOGLUCOMUTASE, CHLOROPLASTIC 441 654 - -
Lal13g0023 654 Gene3D - 254 356 - -
Lal13g0023 654 SUPERFAMILY Phosphoglucomutase, first 3 domains 440 524 IPR016055 GO:0005975|GO:0016868
Lal13g0023 654 CDD PGM1 75 654 - -
Lal13g0023 654 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 439 517 IPR005846 GO:0005975|GO:0016868
Lal13g0023 654 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 83 216 IPR005844 GO:0005975|GO:0016868
Lal13g0023 654 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 249 352 IPR005845 GO:0005975
Lal13g0023 654 Pfam Phosphoglucomutase/phosphomannomutase, C-terminal domain 577 629 IPR005843 GO:0016868|GO:0071704
Lal13g0023 654 SUPERFAMILY Phosphoglucomutase, first 3 domains 248 357 IPR016055 GO:0005975|GO:0016868
Lal13g0023 654 SUPERFAMILY Phosphoglucomutase, first 3 domains 344 409 IPR016055 GO:0005975|GO:0016868
Lal13g0023 654 PRINTS Phosphoglucomutase/phosphomannomutase family signature 171 185 IPR005841 GO:0005975|GO:0016868
Lal13g0023 654 PRINTS Phosphoglucomutase/phosphomannomutase family signature 271 290 IPR005841 GO:0005975|GO:0016868
Lal13g0023 654 PRINTS Phosphoglucomutase/phosphomannomutase family signature 307 320 IPR005841 GO:0005975|GO:0016868
Lal13g0023 654 PRINTS Phosphoglucomutase/phosphomannomutase family signature 336 351 IPR005841 GO:0005975|GO:0016868
Lal13g0023 654 Gene3D - 357 489 - -
Lal13g0023 654 ProSitePatterns Phosphoglucomutase and phosphomannomutase phosphoserine signature. 172 181 IPR016066 GO:0000287
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0023 Lal-Chr13 143500 150681 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0023 K01835 - gmx:100802730 1063.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0023 13 143500 150681 Lal13g0023 13 143500 150681 ECH