Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0020 ATGTTCCATTTTCTCTTTCTCCTTCTTTCTTTCCTCTTTCTCTGCTTCATCATCCTTATCAACTTCATATCAAAACCATGCCCCGTTTACCTTGTTGATTTCTCATGTCTCAAACCCCCTAGCCATTGCACCGCACCCTTCTCAAAGTTCCTTCAAAATGCTTCCATGTTTGATATTTTCAATACCGACAGTGTAGCTTTCATGGCCAAAGTCCTCAGATCTTCAGGTCAAAGTCAACAAACTTATCTCCCTCCTGCCTTACACTACATTCCTCCAAAGACTCACCTAAATGAATCCATCAAAGAGGTCCAAATGGTTCTTTTCCCTATCATGGATGATCTTTTATCCAAAACTAACATTTCACCCTTTGACATAGACATACTTATCATCAACTGCAGTGGCTTTTGTCCCTCACCTTCTCTAACTTCTATTCTCATCAACAAATACTCTATGAGAAATGATGTCAAAAGCTACAATGTCTCTGGCATGGGGTGCAGTGCAAGTGCTCTATGTCTTGACTTGGCTAAAAATCTTCTAAGTGTTCACAAGAACTCCAATCTTATTGTTCTTAGCACAGAGATTTTATCATCAGGTTGGTATTCTGGAAATGAAAGATCCAAGCTGCTTATCAACTGCTTATTCAGGATGGGAAGTGCAGCTATTCTTCTCTCGAACAAGAAAGAAGCAAAGAGAAATGCAAAGTACAAGTTGGTTAAAACACTCAGAACACAAAGAGCTTTTGACAACACGGCTTATTTATCTGCCATAAGAGAAGAGGATTCAGAAGGAAAACTTGGTGTGACACTCACGAGGGACTTGCTTGTTATAGCTGGTGAAACTCTCCGTTCAAATATATCACTATTGGGTTCTGAAATATTGCCTCTTTCAGAAAGGTTGTATCATGTTGCTTCAGTGATTAAGAAAAAGTTAATGAAGTGTGAGGGTGTTTATGTCCCAAATTTCAAGAGTGTGATACAGCACTTCTGCTTGCCATGCTCAGGGAGGGCAGTGATAAGAGAAGTAGGGAAAGGGTTGAAGCTATCAGAGAGAGATGTTGAAGCTGCTTTGATGACACTGCACAGGTTTGGGAACCAATCTTCTTCTGCATTATGGTATCAACTAGCTTACTTGGAAGCCAAGGAAAGAGTGGAATGTGGTCATAAGGTTTGGCTACTTGGAATGGGAAGTGGCCCCAAGTGCAATAGTGTTGTTTTGAAGTCTGTTAAGACAATTGTTGGAGACTCTAACAATGGCCCATGGTCTGATTGTATCCATCATTACCCAATCTTACATTTGGATTAA 1302 0.4025 MFHFLFLLLSFLFLCFIILINFISKPCPVYLVDFSCLKPPSHCTAPFSKFLQNASMFDIFNTDSVAFMAKVLRSSGQSQQTYLPPALHYIPPKTHLNESIKEVQMVLFPIMDDLLSKTNISPFDIDILIINCSGFCPSPSLTSILINKYSMRNDVKSYNVSGMGCSASALCLDLAKNLLSVHKNSNLIVLSTEILSSGWYSGNERSKLLINCLFRMGSAAILLSNKKEAKRNAKYKLVKTLRTQRAFDNTAYLSAIREEDSEGKLGVTLTRDLLVIAGETLRSNISLLGSEILPLSERLYHVASVIKKKLMKCEGVYVPNFKSVIQHFCLPCSGRAVIREVGKGLKLSERDVEAALMTLHRFGNQSSSALWYQLAYLEAKERVECGHKVWLLGMGSGPKCNSVVLKSVKTIVGDSNNGPWSDCIHHYPILHLD 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0020 433 Pfam FAE1/Type III polyketide synthase-like protein 24 310 IPR013601 GO:0006633|GO:0016020|GO:0016747
Lal13g0020 433 PIRSF Very_long_ch_3-ktacl-CoA_syn 1 432 IPR012392 GO:0006633|GO:0016020|GO:0016747
Lal13g0020 433 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 325 406 IPR013747 -
Lal13g0020 433 PANTHER 3-KETOACYL-COA SYNTHASE 6 430 IPR012392 GO:0006633|GO:0016020|GO:0016747
Lal13g0020 433 PANTHER 3-KETOACYL-COA SYNTHASE 6 430 - -
Lal13g0020 433 CDD CHS_like 28 405 - -
Lal13g0020 433 SUPERFAMILY Thiolase-like 15 231 IPR016039 GO:0016746
Lal13g0020 433 Gene3D - 48 408 IPR016039 GO:0016746
Lal13g0020 433 SUPERFAMILY Thiolase-like 214 409 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0020 Lal-Chr13 131275 132576 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0020 2 430 Miscellaneous Gene Families AT1G25450 48.837 6.73e-154 443
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0020 K15397 - gmx:100813265 680.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0020 13 131275 132576 Lal13g0020 13 131275 132576 ECH