Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g1324 ATGGCATCCCATATTGTTGGATATCCTCGCATGGGCCCCAAGAGAGAGCTCAAGTTCGCTTTGGAGTCATTCTGGGATAAGAAGAGCAGCGCCGAGGATTTGCAAAAGGTCGCGTGTGATCTGAGGGCATCCATCTGGAAGCAGATGGCTGATGCTGGGATTAAGTACATCCCCAGCAACACTTTCTCATACTATGATCAGGTGCTCGATGCAACTGCTTTGCTTGGCGCCGTTCCACCTAGATATGGATGGAGTGGTGGGGAGATTGGGTTTGATACCTACTTCTCCATGGCTAGAGGCAATGCATCTCTTCCTGCAATGGAGATGACAAAGTGGTTTGACACTAACTACCACTTTATCGTCCCGGAATTGGGACCTGATGTGAACTTCTGTTATGCTTCCCACAAGGCAGTGGACGAGTACAAGGAGGCCAAGGCGCTTGGGGTAGATACAGTTCCAGTCCTCGTTGGTCCCGTATCATACTTGATACTCTCCAAACCTGCTAAGGGTGTTGATAAATCATTTTCTCTTCTTTCTCTACTCCCGAAAGTCCTTGCTGTCTACAAGGAAGTTGTGGATGATCTTAAGGCAGCTGGTGCTTCATGGATTCAATTTGATGAACCTACCCTTGTCACAGACCTTGATTCTCAGCAATTGCAAGCATTTACTGCAGCGTACTCAGATCTTGCATCTACTTTATCTGGTTTAAATGTTCTTGTTGAGACATACTTTGCTGACATTCCCGCTGAGGCATTCAAGACCCTCACATCTCTAGGTTGTGTCACCGCATTCGGATTTGATTTAATTCGTGGAACTAAAACTCTTGATTTGATAAAGGGAGGATTTCCTAGTGGAAAGTACCTCTTTGCTGGTGTGGTTGATGGAAGGAACATTTGGGCTAATGACCTTGCCGCTTCTCTCAACACATTAAATGCTCTTGAGGGCATTGTAGGCAAAGATAAACTTGTTGTGTCCACCTCCTGCTCACTTCTTCACACTGCTGTCGATCTCGTTAACGAGACCAAGTTGGATAATGAGATCAAGTCATGGCTCGCTTTTGCTGCTCAAAAAATTGTTGAAGTGAATGCATTGGCCAATGCAATGTGTGGGAAAAAAGACGAGGCTTTCTTCTCTTCTAATGCCTCTGCTCTGGCTTCAAGAAAGTCTTCTCCTAGAGTGACTAATGAGGGTGTTCAGAAGGCTGCTGCTGCATTGAAGGGTTCTGACCATCGTCGTGCTACTAATGTAAGCACTAGACTAGATGCTCAACAAAGGAAGCTTAACCTTCCTGTTCTCCCGACCACCACTATTGGATCCTTCCCCCAAACTGTTGAGTTGAGGAGGGTGCGTCGTGAATACAAAGCTAACAAGATCTCTGAGGAAGAATACGTAAAATCAATTACAGAGGAAATTCGCAAAGTCGTTGTTCTCCAAGAAGAGCTTGATATCGATGTTATGGTACATGGGGAGCCTGAGAGGAATGATATGGTTGAGTATTTTGGTGAGCAATTGTCAGGCTTTGCCTTCACAGTGAACGGGTGGGTGCAATCTTACGGATCTCGCTGTGTGAAGCCACCAATCATCTATGGTGACGTGAGTCGCCCAAAGCCGATGACTGTCTTCTGGTCATCCACTGCTCAAGGCATGACCAAGCGCCCGATGAAGGGAATGCTTACTGGCCCTGTCACCATTCTCAACTGGTCCTTTGTTAGAAATGACCAGCCTAGATCAGAGACTTGTTATCAAATTGCTTTAGCTATCAAGGATGAAGTTGAAGATCTCGAAAAGGCTGCAATCACCGTTATCCAGATCGATGAGGCTGCCTTAAGAGAAGGGTTACCATTGAGAAAGTCGGAGCAAGCTCACTACTTAGACTGGGCTGTCCACTCCTTCAGAATCACCAATGTTGGTGTGCAGGATACTACTCAGATCCACACCCACATGTGCTACTCTAATTTCAATGACATCATCCACTCGATCATTGATATGGACGCAGACGTGATCACCATCGAGAACTCTCGTTCTGATGAAAAACTCCTTTCAGTCTTCCGCGAAGGAGTGAAGTATGGAGCTGGAATTGGCCCTGGTGTCTATGACATTCACTCCCCGAGAATCCCGTCAAACGAAGAAATGGCTGAGAGGATTAACAAGATGCTTGCAGTTCTTGAGACACACATTTTATGGGTCAATCCAGATTGTGGCCTCAAGACTCGAAAGTACACAGAAGTGAAGCCAGCACTTGAAAACATGGTTGCTGCTACAAAACTCATTCGCAACCATTTGGGAAAGTGA 2292 0.4607 MASHIVGYPRMGPKRELKFALESFWDKKSSAEDLQKVACDLRASIWKQMADAGIKYIPSNTFSYYDQVLDATALLGAVPPRYGWSGGEIGFDTYFSMARGNASLPAMEMTKWFDTNYHFIVPELGPDVNFCYASHKAVDEYKEAKALGVDTVPVLVGPVSYLILSKPAKGVDKSFSLLSLLPKVLAVYKEVVDDLKAAGASWIQFDEPTLVTDLDSQQLQAFTAAYSDLASTLSGLNVLVETYFADIPAEAFKTLTSLGCVTAFGFDLIRGTKTLDLIKGGFPSGKYLFAGVVDGRNIWANDLAASLNTLNALEGIVGKDKLVVSTSCSLLHTAVDLVNETKLDNEIKSWLAFAAQKIVEVNALANAMCGKKDEAFFSSNASALASRKSSPRVTNEGVQKAAAALKGSDHRRATNVSTRLDAQQRKLNLPVLPTTTIGSFPQTVELRRVRREYKANKISEEEYVKSITEEIRKVVVLQEELDIDVMVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKPMTVFWSSTAQGMTKRPMKGMLTGPVTILNWSFVRNDQPRSETCYQIALAIKDEVEDLEKAAITVIQIDEAALREGLPLRKSEQAHYLDWAVHSFRITNVGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSNEEMAERINKMLAVLETHILWVNPDCGLKTRKYTEVKPALENMVAATKLIRNHLGK 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g1324 763 Gene3D - 5 525 IPR038071 -
Lal12g1324 763 CDD CIMS_N_terminal_like 3 367 - -
Lal12g1324 763 PIRSF Met_synth_MetE 1 763 IPR006276 GO:0003871|GO:0008270|GO:0009086
Lal12g1324 763 PANTHER COBALAMIN-INDEPENDENT METHIONINE SYNTHASE 1 761 - -
Lal12g1324 763 SUPERFAMILY UROD/MetE-like 398 758 IPR038071 -
Lal12g1324 763 Gene3D - 390 758 IPR038071 -
Lal12g1324 763 SUPERFAMILY UROD/MetE-like 3 395 IPR038071 -
Lal12g1324 763 CDD CIMS_C_terminal_like 433 756 IPR002629 GO:0003871|GO:0008270|GO:0009086
Lal12g1324 763 Pfam Cobalamin-independent synthase, N-terminal domain 3 315 IPR013215 GO:0003871|GO:0008270|GO:0008652
Lal12g1324 763 TIGRFAM met_syn_B12ind: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 6 759 IPR006276 GO:0003871|GO:0008270|GO:0009086
Lal12g1324 763 Hamap 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [metE]. 1 760 IPR006276 GO:0003871|GO:0008270|GO:0009086
Lal12g1324 763 Pfam Cobalamin-independent synthase, Catalytic domain 432 755 IPR002629 GO:0003871|GO:0008270|GO:0009086
Lal12g1324 763 PANTHER 5-METHYLTETRAHYDROPTEROYLTRIGLUTAMATE--HOMOCYSTEINE METHYLTRANSFERASE 1 761 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g1324 Lal-Chr12 16253812 16259498 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g1324 K00549 - gmx:547643 1385.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g1324 12 16253812 16259498 Lal12g1324 12 16253812 16259498 ECH
Lal8g1013 8 7966814 7972102 Lal12g1324 12 16253812 16259498 PCT
Lal10g0464 10 10920797 10926027 Lal12g1324 12 16253812 16259498 PCT
Lal12g1324 12 16253812 16259498 Lal8g1013 8 7966814 7972102 PCT
Lal12g1324 12 16253812 16259498 Lal10g0464 10 10920797 10926027 PCT