Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0867 ATGGATGTATCTCAGTATATCATAAAAATATCAGCTTTAATATCTTCTGATTCAGTAAGATCTTCGAATGATAATACTCTTTTGAAACAGATGCTAGTATTGCCTGTGTTGGAACTTGCTTCAATATGTGTGAACCTGACCCTTGTTCTATTGTTTCTCTTTGTTGTCTCTGTTAGAAGCATTATTGTGTGTGAGGGTCGAATTCGAAGTCGTAATGGTAAAGAGAATAACTCTGGCAATGGAAATAATAGGAGCATTGATGTAGAAACATGTGATGTTCGAATCGGTGGAGTGTTCAAGTTGTCAGTGTTGTCTGGTTTCTATGTTCTGTTGGTTCAGGTTTTTGTGTTGGGGTTTGATGGGGGTGCTTTGATTTGGGGTGAGGCTAATGGGAAGGACAAAAAATCTGTGTACTTGTATGTTCTTATTGTGCCAGCTTCACAAGGTTTAGCTTGGTTTGTGTTAAGCTTCTCTACTTTGCATTGCAAATTCAAGGTGTCCGAAAAGTTCCCATTTCTGTTAAGAGTTTGGTGGGTTTTGTCATTTGTTATTTGCTTGTGTACTTTGTATGTTGATGGGAGAGGTTTTTGGGTTGAAGGTTATAAGCACTTACGTTCTCATGTTGTTGCTAATTTCGCTGTTACCCCAGCTCTTGCATTTTTGTGCATAGCAGCAATTAGGGGTGTTACTGGTATAGAAGTAATTTGTAGGAACTCTAATCTTTATGAGCCGTTCCTTGTTGAAGAAGAACCAGGTTGTCTTAAGGTTACTCCTTACCGGGATGCTGGATTTTTTAGCTTGGCTACTCTTTCTTGGTTGAATCCATTACTTTCGATCGGTGCGAAGAGACCACTTGAGCTTAAGGACATTCCTCTTGTTGCACCAAAGGATAGAGCCAAGGCTAGTTATAAGGTTTTGAACTCTAATTGGGAGAAGTTGAAGGCTGAGAATCCCTCTAAGCAGCCTTCATTAGCTTCGGCAATTCTTAAGTCATTCTGGAAAGAAGCAGCTGTGAATGCCATCTTTGCTGGTTTGAATACTTTGGTCTCATATGTAGGACCATACATGATAAGTTACTTTGTCGATTACTTGAGTGGTAAAGAGACTTTCCCTAACGAGGGGTATGTCCTCGCGGGTATATTCTTTGTCGCAAAGCTTGTGGAGACCCTGACAACTAGGCAGTGGTACCTAGGAGTTGACATTTTGGGTATGCATGTTCGGTCAGCTCTAACTGCAATGGTATACCGAAAGGGACTCCGACTCTCAAGCTCGGCAAAGCAAAGTCACACAAGTGGGGAGATTGTGAACTACATGGCTGTTGATGTTCAGAGAGTAGGGGACTACTCTTGGTATCTTCATGACATGTGGATGCTTCCCATGCAGATTGTTCTCGTCCTTTTGATTTTGTATAAGAATGTTGGAATTGCTTCCGTCGCAACTTTGATTGCTACAATCATTTCCATTGTCATCACCATTCCTGTGGCTAGGATGCAAGAAGATTATCAAGACAAATTGATGGCTGCTAAGGATGAAAGGATGAGAAAAACATCCGAGTGTCTCAGAAATATGAGGATTCTCAAACTGCAAGCTTGGGAACACAGATATCAACTACAATTGGAGGAAATGCGTGGTGTTGAGTACAAGTGGCTTCGGAAAGCCCTCTATTCTCAGGCTTGCATAACTTTCATGTTTTGGAGCTCACCGATATTTGTTTCAGCTGTCACTTTCGCTACTTCCATATTATTGGGAGGTCAGCTGACAGCTGGTGGTGTCCTTTCTGCTCTAGCTACTTTCAGGATCCTCCAAGAACCACTGAGAAGTTTTCCCGACTTGGTATCAATGATGGCTCAGACAAAAGTTTCTCTTGATCGCTTATCCAGTTTCCTGCAGGACGAAGAATTGCAGGGAGATGCAACAATCATCTTGCCACAAGGCACTTCCGACGTTGCCATAGAAATTAAGGACGGTGTCTTCTCCTGGGACCCTTCTCTGTCTAGGCCTACTCTATCAGGAGTACATATGAGAGCGGAAAGGGGGATGCATGTCGCTGTTTGTGGCACAGTTGGTTCTGGGAAATCAAGTTTTCTTTCTTGCATCCTTGGAGAGATTCCTAAGCTTTCCGGTGAAGTAAGGGTGTGTGGTTCTTCTGCGTATGTCTCCCAATCAGCATGGATACAGTCAGGGAATATAGAAGAAAATGTTCTCTTTGGAAGCCCAATGGACAAAGCAAAGTACAAGAATGTTCTACATGCTTGTTCATTGAAAAAGGACCTGAAGCTTTTCTCACACGGAGACCAAACGATTATTGGTGATAGAGGTATAAACCTGAGTGGTGGCCAGAAGCAGCGGGTTCAGCTTGCACGAGCACTCTACCAAGATGCTGATATTTATCTCCTTGATGATCCCTTCAGCGCACTTGATGCCCACACTGGATCAGAATTGTTTAGGGAATATGTATTGACAGCACTAGCAGATAAAACAGTCATTTTTGTGACCCATCAAGTTGAATTTCTTCCTGCTGCTGATATGATACTGGTTCTTAAGGAAGGGCACATCATACAAGCAGGAAAATATGATGATCTTTTGCAAGCAGGAACAGATTTTAGCATTCTAATTTCAGCTCACCATGAAGCAATAGAAGCTATGGACATTCCTACTCACTCTTCAGAAGACTCGGATGAAAATGTGCTCCTAGATATATCTGTTATGAACTGTAAGAATTCCATTTCTTCTGAAAATGATATTGACATTTTGGCAAAGGAGATGCAAGAGGGATCATCAGATCAGAAAGCAATTAAGGAGAAGAAGAAAGCGAAACGCTCGAGAAAAAAACAACTTGTTCAAGAAGAGGAGAGGGTTAGAGGTAAAGTCAACATGAAGGTGTACTTGTCGTACATGGCTTCAGCATACAAAGGCTTATTGATTCCTCTCATAATCATTGCGCAAACATTATTTCAGTTCCTTCAGATTGCCAGTAATTGGTGGATGGCTTGGGCAAATCCTCAAACTGAAGGAGACCAACCCAAAGTAAGTCCCTCGGTTCTTCTTCTTGTTTACATGGCCCTTGCTTTTGGCAGCTCGTGGTTTATATTCGTAAGGGCTATTTTGGTGGCTGCATTTGGTCTAGCTGCTTCACAGAAGCTATTTTTCAAGATGCTTAGAAGTATTTTCCATGCACCTATGTCTTTCTTTGACTCTACACCAGCTGGAAGGATCTTGAATCGCGTTTCTGTTGATCAAAGTGTTGTGGATCTTGATATTCCTTTTAGACTCGGTGGATTTGCTTCAACAACAATACAGCTTATTGGCATTGTTGCTGTAATGTCTGAAGTTACATGGCAAGTTTTACTCCTAGTTGTCCCAATGGCTGTTGCTTGTTTGTGGATGCAGAAATACTACATGTCTTCCTCAAGGGAACTGGTACGTATTGTAAGCATCCAGAAATCTCCAATTATAAATCTTTTTGGTGAATCAATTTCTGGAGCAGCTACCATCAGAGGTTTTGGACAAGAAAAAAGGTTCATGAAGAGAAACCTTTATCTTCTGGATGCTTTTGCACGACCCTTCTTTTGCAGTCTTGCAGCTATCGAGTGGCTCTGCCTGCGCATGGAATTACTTTCAACCTTTGTATTTGCTTTCTGTATGGTATTACTCGTGAGCGTTCCCCATGGGAGTATTGACCCCAGCATGGCTGGACTTGCTGTGACATATGGCCTGAATTTAAATGCACGTCTATCACGGTGGATACTTAGTTTTTGCAAACTTGAAAATAAAATTATATCTATTGAGAGAATATATCAGTACAGCCAAATTCCTAGTAAAGCACCAGCAGTTATTGAAGATTCACGCCCTCCATCCACATGGCCTGAGAATGGGACAATCCAAATTACCGATTTGAAGGTCCGTTACAAGGAAAGTCTTCCTCTGGTTCTTCATGGAGTATCCTGCACATTTCCTGGTGGGAAGAAGATTGGGATTGTTGGACGTACTGGCAGTGGTAAATCTACTTTGATTCAGGCATTATTTCGATTGGTTGAACCATCAACTGGGAGAATCCTTATAGACAACATCAATATATCGGGAATTGGTCTTCATGACCTTCGAAGCCATCTGAGTATCATACCACAAGATCCAGCATTGTTTGAAGGCACCATCCGAGGCAATCTCGATCCTCTTGAAGAGCACTCGGACAAAGAGATTTGGGAGGCACTAGACAAGTCTCAGCTTGGAGATATTATCCGTGAGAAAGAGCAAAAGCTTGATACACCAGTGCTAGAAAATGGAGATAATTGGAGCGTAGGACAGCGGCAACTTGTTTCTCTGGGCCGAGCTCTACTTAAGCAGTCGAAAATACTTGTACTTGATGAAGCAACAGCATCTGTTGACACTGCTACCGACAATCTTATCCAGAAGATTATTCGAGAAGAGTTCAGAGACTGCACTGTGTGCACCATTGCACACCGTATTCCTACTGTTATTGACAGTGATCTTGTTCTGGTACTCAGTTATGGTCGGGTAGCAGAGTATGACACTCCATCACGGCTATTAGAGGATAAGTCGTCCATGTTTCTGAAGTTGGTGACCGAGTATTCGTCGCGGTCAAGTGGCATACCTGATTTTTAA 4623 0.422 MDVSQYIIKISALISSDSVRSSNDNTLLKQMLVLPVLELASICVNLTLVLLFLFVVSVRSIIVCEGRIRSRNGKENNSGNGNNRSIDVETCDVRIGGVFKLSVLSGFYVLLVQVFVLGFDGGALIWGEANGKDKKSVYLYVLIVPASQGLAWFVLSFSTLHCKFKVSEKFPFLLRVWWVLSFVICLCTLYVDGRGFWVEGYKHLRSHVVANFAVTPALAFLCIAAIRGVTGIEVICRNSNLYEPFLVEEEPGCLKVTPYRDAGFFSLATLSWLNPLLSIGAKRPLELKDIPLVAPKDRAKASYKVLNSNWEKLKAENPSKQPSLASAILKSFWKEAAVNAIFAGLNTLVSYVGPYMISYFVDYLSGKETFPNEGYVLAGIFFVAKLVETLTTRQWYLGVDILGMHVRSALTAMVYRKGLRLSSSAKQSHTSGEIVNYMAVDVQRVGDYSWYLHDMWMLPMQIVLVLLILYKNVGIASVATLIATIISIVITIPVARMQEDYQDKLMAAKDERMRKTSECLRNMRILKLQAWEHRYQLQLEEMRGVEYKWLRKALYSQACITFMFWSSPIFVSAVTFATSILLGGQLTAGGVLSALATFRILQEPLRSFPDLVSMMAQTKVSLDRLSSFLQDEELQGDATIILPQGTSDVAIEIKDGVFSWDPSLSRPTLSGVHMRAERGMHVAVCGTVGSGKSSFLSCILGEIPKLSGEVRVCGSSAYVSQSAWIQSGNIEENVLFGSPMDKAKYKNVLHACSLKKDLKLFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSALDAHTGSELFREYVLTALADKTVIFVTHQVEFLPAADMILVLKEGHIIQAGKYDDLLQAGTDFSILISAHHEAIEAMDIPTHSSEDSDENVLLDISVMNCKNSISSENDIDILAKEMQEGSSDQKAIKEKKKAKRSRKKQLVQEEERVRGKVNMKVYLSYMASAYKGLLIPLIIIAQTLFQFLQIASNWWMAWANPQTEGDQPKVSPSVLLLVYMALAFGSSWFIFVRAILVAAFGLAASQKLFFKMLRSIFHAPMSFFDSTPAGRILNRVSVDQSVVDLDIPFRLGGFASTTIQLIGIVAVMSEVTWQVLLLVVPMAVACLWMQKYYMSSSRELVRIVSIQKSPIINLFGESISGAATIRGFGQEKRFMKRNLYLLDAFARPFFCSLAAIEWLCLRMELLSTFVFAFCMVLLVSVPHGSIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPSKAPAVIEDSRPPSTWPENGTIQITDLKVRYKESLPLVLHGVSCTFPGGKKIGIVGRTGSGKSTLIQALFRLVEPSTGRILIDNINISGIGLHDLRSHLSIIPQDPALFEGTIRGNLDPLEEHSDKEIWEALDKSQLGDIIREKEQKLDTPVLENGDNWSVGQRQLVSLGRALLKQSKILVLDEATASVDTATDNLIQKIIREEFRDCTVCTIAHRIPTVIDSDLVLVLSYGRVAEYDTPSRLLEDKSSMFLKLVTEYSSRSSGIPDF 1540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0867 1540 SMART AAA_5 678 859 IPR003593 -
Lal12g0867 1540 SMART AAA_5 1320 1505 IPR003593 -
Lal12g0867 1540 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1294 1528 IPR003439 GO:0005524
Lal12g0867 1540 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 647 871 IPR027417 -
Lal12g0867 1540 Gene3D - 646 878 IPR027417 -
Lal12g0867 1540 Gene3D ABC transporter type 1, transmembrane domain 307 633 IPR036640 GO:0005524|GO:0016021
Lal12g0867 1540 Gene3D ABC transporter type 1, transmembrane domain 936 1275 IPR036640 GO:0005524|GO:0016021
Lal12g0867 1540 SUPERFAMILY ABC transporter transmembrane region 328 633 IPR036640 GO:0005524|GO:0016021
Lal12g0867 1540 CDD ABC_6TM_ABCC_D2 975 1269 IPR044726 GO:0140359
Lal12g0867 1540 Coils Coil 932 952 - -
Lal12g0867 1540 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 651 874 IPR003439 GO:0005524
Lal12g0867 1540 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 79 1540 - -
Lal12g0867 1540 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1284 1524 IPR027417 -
Lal12g0867 1540 Pfam ABC transporter transmembrane region 340 605 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal12g0867 1540 Pfam ABC transporter transmembrane region 977 1217 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal12g0867 1540 Gene3D - 1277 1530 IPR027417 -
Lal12g0867 1540 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 977 1247 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal12g0867 1540 Pfam ABC transporter 669 803 IPR003439 GO:0005524
Lal12g0867 1540 Pfam ABC transporter 1311 1459 IPR003439 GO:0005524
Lal12g0867 1540 CDD ABCC_MRP_domain2 1292 1512 - -
Lal12g0867 1540 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 340 617 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal12g0867 1540 ProSitePatterns ABC transporters family signature. 776 790 IPR017871 GO:0005524
Lal12g0867 1540 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 79 1540 - -
Lal12g0867 1540 CDD ABCC_MRP_domain1 651 850 - -
Lal12g0867 1540 CDD ABC_6TM_ABCC_D1 338 625 IPR044746 GO:0140359
Lal12g0867 1540 SUPERFAMILY ABC transporter transmembrane region 974 1276 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0867 Lal-Chr12 7082835 7091746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0867 651 867 Calmodulin-binding Proteins AT2G36910 32.203 3.80e-21 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0867 - - gmx:100781010 2566.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0867 12 7082835 7091746 Lal12g0867 12 7082835 7091746 ECH
Lal12g0867 12 7082835 7091746 Lal13g1059 13 7834868 7844241 LSH
Lal1g1871 1 21010200 21018187 Lal12g0867 12 7082835 7091746 PCT
Lal12g0867 12 7082835 7091746 Lal1g1871 1 21010200 21018187 PCT