Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0531 ATGAACTACAACGGCGGAAAATGGCTGATCCGGCGGCTATGCACGGAGGTAAAGAAAGTAAACATTTACCGACAGCTATCGGCGCTGGAAATGACCGGAGGCACCGTGTCGCAGACGCTGAACCAGTATGTAATGGAAGGCAAATCCATACAAAAAGAGGAGCTCGAGAGATGCGTCAAGCAGCTTCGAAAGTACCACAAATTCCAGCACGCACTCGAGATAATGGAATGGATGGAAATGAGGAAAGTTAATTTTGCTTCAGATAATTATGCAATTTATTTAGATCTTATATCCAAAACCAAAGGGTTGGATGCAGCTGAGAATTACTTTAACAGTCTTCCTCTGGAAGCGAAGAACAAATATACATATGGTGCTCTTTTGAACTGTTACTGCAAGAACCTAGTGACGGACAAGGCATTAGCTCATTTTGAAAAGATGGATGAACTGGGTTTTGTCACTAATCTGGCTTTCAACAATTTAATGTCTTTGTATATGAGACTGGGTCAACCCGAGAAGGTGCCTCTGTTGGTGGATGATCTGAAGCAGAGGAAAATCCCCATGGCTGCGTTTACGTATCATATCTGGATGAATAGCTATGCGGATCTAAATGATCTCAATGGGGTTGAGAGAGTCTACGAGGAGATGAAAAGAGAAGATGAAAAAGAAATTAGTTGGCATACGTATAACAACCTTTCAGCTATCTATGTGAAAACTAAGGATTTTGAAAAAGCTGAGTCGTTTCTTAAGATGGTAGAACAAAAAGTGCAACCTCAGCAACGTTATACTTACCATTTCTTGCTTAGCCAATATGCCGCGACATCTAATTTAGTAGAGGTGCATAGGATATGGAATTCCCTGAAGTCAGTCTTCCCGGTGACCAACATGAGCTATCTTGCCATGCTTCACTCTCTTCGAAGGCTTGATGATATTGAGGGAATAACAAAATGCTTTAAGGAGTGGGAATCTAATTGTGTTACTTATGATATAAGGTTGGTTAATGTTGTCATTAGTGTTTACTTGAGTCACAACCTGTCTGACGAAGCTGAATTGGTTTTTAAGGAGGCTATCAGGAGGAGGAAAAATGGACCTTTCTTTAGGATTCGTGAAATGTTCATGATGTATTACTTGGAAAAAGGTCAGTTGGATGGTGCTCTGAGCCACCTAGAGGCGGTATTTTCAGACGTCGGAATTGAAAAATGGCGTCCGTCTCCAGAAGTTGCAAGTGCTTTTCTGAAGTATTATGAAGAAGAGACAGATCTTGATGGCGTTGAGGAGTTAAGCAAGATTCTCAAGAGTCACAATTTAGATTATTCCTGGTTCAAATCATCTCCTGTGATTAATGAAACACTGGAGGAAGATTCTCAAGTAAACTCTGCACTCTAG 1383 0.4107 MNYNGGKWLIRRLCTEVKKVNIYRQLSALEMTGGTVSQTLNQYVMEGKSIQKEELERCVKQLRKYHKFQHALEIMEWMEMRKVNFASDNYAIYLDLISKTKGLDAAENYFNSLPLEAKNKYTYGALLNCYCKNLVTDKALAHFEKMDELGFVTNLAFNNLMSLYMRLGQPEKVPLLVDDLKQRKIPMAAFTYHIWMNSYADLNDLNGVERVYEEMKREDEKEISWHTYNNLSAIYVKTKDFEKAESFLKMVEQKVQPQQRYTYHFLLSQYAATSNLVEVHRIWNSLKSVFPVTNMSYLAMLHSLRRLDDIEGITKCFKEWESNCVTYDIRLVNVVISVYLSHNLSDEAELVFKEAIRRRKNGPFFRIREMFMMYYLEKGQLDGALSHLEAVFSDVGIEKWRPSPEVASAFLKYYEEETDLDGVEELSKILKSHNLDYSWFKSSPVINETLEEDSQVNSAL 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0531 460 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 119 153 IPR002885 -
Lal12g0531 460 PANTHER OS12G0527900 PROTEIN 5 435 - -
Lal12g0531 460 PANTHER OS01G0301500 PROTEIN 5 435 - -
Lal12g0531 460 Pfam PPR repeat 156 184 IPR002885 -
Lal12g0531 460 Pfam PPR repeat 121 151 IPR002885 -
Lal12g0531 460 Pfam PPR repeat 333 358 IPR002885 -
Lal12g0531 460 Pfam PPR repeat 227 252 IPR002885 -
Lal12g0531 460 Pfam PPR repeat 190 218 IPR002885 -
Lal12g0531 460 Gene3D Tetratricopeptide repeat domain 20 156 IPR011990 GO:0005515
Lal12g0531 460 SUPERFAMILY TPR-like 120 318 IPR011990 GO:0005515
Lal12g0531 460 Gene3D Tetratricopeptide repeat domain 175 291 IPR011990 GO:0005515
Lal12g0531 460 Gene3D Tetratricopeptide repeat domain 292 457 IPR011990 GO:0005515
Lal12g0531 460 TIGRFAM PPR: pentatricopeptide repeat domain 190 219 IPR002885 -
Lal12g0531 460 TIGRFAM PPR: pentatricopeptide repeat domain 121 153 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0531 Lal-Chr12 3795250 3797314 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0531 22 431 EF-hand Containing Proteins AT1G02150 34.300 3.80e-77 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0531 - - gmx:100781679 639.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0531 12 3795250 3797314 Lal12g0531 12 3795250 3797314 ECH
Lal12g0531 12 3795250 3797314 Lal1g1743 1 19836716 19837687 PCT