Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0406 ATGGCTATGCACACCGCACCTTCCCTTCGTATTCCCTCCTCTTCACTTTCTCTCTCCTCCAAATTCCCCCTCTCCTCCGCCCTCTCCCTCCGCCCCTTCCACCGCCGCCACCGCTCCCTCGTGTTCATTGTCTCAGCCTCCCTCGACGCCAAGCCCACCGTCCTTGTCGCCGAGAAGCTCGGCGAAGCTGGTCTCAAGCTTCTCAAAGACTTCGCCAACGTAGATTGCTCTTATAGTCTCACTCCTGAGGAGTTGTGCTCCAAGATCTCACTATGCGATGCTCTTATTGTTCGTAGCGGAACCAAGGTATCACGTGATGTGTTCGAATCTTCCGAGGGAAGACTCAAAGTTGTTGGAAGAGCCGGTGTTGGAATCGACAATGTCGATCTCGCTGCCGCTACTGAGTTTGGATGTTTGGTCGTTAATGCCCCTACCGCTAACACTGTTGCCGCGGCGGAGCATGGTATTGCGCTTTTGGCTGCCATGGCTAGGAACGTTGCTCAGGCCGATGCGTCTGTCAAATCTGGGAAATGGCAGAGGAATAAGTATGTGGGAGTTTCCCTAGTCGGGAAAACGATTGCTGTCATGGGATTTGGGAAGGTTGGTACTGAAGTTGCTCGACGTGCAAAGGGGCTTGGTATGCATGTTATTGCACATGACCCATATGCTCCAGCAGATCGTGCTCGTGCCATTGGTGTGGAGCTTGTGAGCTTTGATGAGGCCATTTCTACTGCAGATTTCATCTCTTTGCACATGCCGCTTACACCTGCTACATCAAAGGTTCTCAATGATGAGACTTTTGCAAAGATGAAGAAAGGAGTTCGAATTGTCAATGTTGCTCGTGGAGGAGTCATTGATGAGGATGCTCTTGTTAGGGCGCTGGATGCTGGAATTGTAGCTCAGGCGGCACTTGATGTTTTCACAGAGGAGCCACCATCTAAAGACAGCAAGTTGATTCTGCATGAGCAAGTTACTGCAACACCTCATCTTGGTGCCAGTACCATGGAGGCCCAGGAAGGTGTGGCTATTGAAATAGCAGAAGCTGTTGTTGGGGCATTGAGAGGGGAGCTTGCTGCTACTGCCGTCAATGCACCAATGGTTCCCGCAGAGGTGTTAACAGAGTTGAAACCGTTTGTTGACCTTGCCGAGAAACTGGGTAGGCTGGCTGTCCAGCTAGTAACAGGAGGAAGTGGGGTAAAAACAGTGAAAGTGACTTATGCTACTTCTAGGGCCCCTGATGATCTCGACACTCGTCTTCTCCGTGCTATGATAACCAAGGGTCTGATTGAGCCCATATCCAGTGTTTTCGTGAACTTGGTCAATGCTGATTTCACTGCTAAACAAAGAGGTCTCAGGATAACTGAGGAGAGAATTATTCTTGATGGCTCACCTGAAAATCCGCTTGAATACGTCCAGGTCCAGATTGCTAATGTGGAATCCCGATTTGCTAGTGCCATATCAGATTCTGGGGAGATTACGGTTGAGGGTCGAGTGAAAGACGGTATTCCACATCTGACTAAGGTTGGATCCTTCGAAGTTGATGTGAGCTTGGAAGGTAGCATTATACTGTGCAGGCAGGTAGATCAACCAGGCATGATTGGAAAGGTTGGGAGCGTTTTGGGTCAGGAGAATGTGAATGTCAGCTTCATGAGTGTTGGAAGGATCGCTCCACGCAAGCAAGCTGTAATGGCAATTGGGGTAGATGAGCAACCTAGCAAAGAAACTTTAAAGAAGATTGGAGATATTCCTGCTGTTGAAGAGTTCGTTTTTCTGAAGTTGTAA 1782 0.4938 MAMHTAPSLRIPSSSLSLSSKFPLSSALSLRPFHRRHRSLVFIVSASLDAKPTVLVAEKLGEAGLKLLKDFANVDCSYSLTPEELCSKISLCDALIVRSGTKVSRDVFESSEGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKSGKWQRNKYVGVSLVGKTIAVMGFGKVGTEVARRAKGLGMHVIAHDPYAPADRARAIGVELVSFDEAISTADFISLHMPLTPATSKVLNDETFAKMKKGVRIVNVARGGVIDEDALVRALDAGIVAQAALDVFTEEPPSKDSKLILHEQVTATPHLGASTMEAQEGVAIEIAEAVVGALRGELAATAVNAPMVPAEVLTELKPFVDLAEKLGRLAVQLVTGGSGVKTVKVTYATSRAPDDLDTRLLRAMITKGLIEPISSVFVNLVNADFTAKQRGLRITEERIILDGSPENPLEYVQVQIANVESRFASAISDSGEITVEGRVKDGIPHLTKVGSFEVDVSLEGSIILCRQVDQPGMIGKVGSVLGQENVNVSFMSVGRIAPRKQAVMAIGVDEQPSKETLKKIGDIPAVEEFVFLKL 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0406 593 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 51 184 - -
Lal12g0406 593 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 241 263 IPR029753 -
Lal12g0406 593 PANTHER FORMATE DEHYDROGENASE 1 35 588 - -
Lal12g0406 593 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 150 332 IPR036291 -
Lal12g0406 593 Gene3D - 368 519 IPR029009 -
Lal12g0406 593 PANTHER D-3-PHOSPHOGLYCERATE DEHYDROGENASE 35 588 - -
Lal12g0406 593 SUPERFAMILY Serine metabolism enzymes domain 369 515 IPR029009 -
Lal12g0406 593 TIGRFAM PGDH: phosphoglycerate dehydrogenase 54 591 IPR006236 GO:0004617|GO:0006564
Lal12g0406 593 Gene3D - 520 593 - -
Lal12g0406 593 Gene3D - 147 329 - -
Lal12g0406 593 CDD ACT_3PGDH-xct 522 593 - -
Lal12g0406 593 SUPERFAMILY ACT-like 511 590 IPR045865 -
Lal12g0406 593 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 54 363 IPR006139 GO:0016616|GO:0051287
Lal12g0406 593 Pfam ACT domain 521 583 IPR002912 -
Lal12g0406 593 Gene3D - 56 356 - -
Lal12g0406 593 CDD PGDH_4 54 356 - -
Lal12g0406 593 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 193 220 IPR029752 -
Lal12g0406 593 ProSiteProfiles ACT domain profile. 521 593 IPR002912 -
Lal12g0406 593 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 156 331 IPR006140 GO:0051287
Lal12g0406 593 SMART AdoHcyase_NAD_2 181 335 IPR015878 -
Lal12g0406 593 Pfam D-3-phosphoglycerate dehydrogenase intervening domain 374 477 IPR045626 -
Lal12g0406 593 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 270 286 IPR029753 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0406 Lal-Chr12 2881206 2884825 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0406 K00058 - gmx:100819264 984.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0406 12 2881206 2884825 Lal12g0406 12 2881206 2884825 ECH