Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0372 ATGTTGCAAACCCTAGCGGCACCCATAAGAGTGAGACCACTTTTGGTGAATAACTCATGGCTCCGAAGCATGAGTGTTCGTTCGTTTTGTTCTTCCTCCAATTACGAAGACCAATCACGTGGTGGCCTTCCACGCTTCTACTCCCAAACACTTCCTCCTTCCAAGGCACACAAACTCTCTTTCTACTCATTTCATAATCCCACATTTCATATTCTAATACCATTTTTAATTAACAATGCCACATTTGTCATTCTCACTATATACACACCCTTCTTGGGATGGGGTTTTATGAAAGGTAATGGTGTTCGTGTAAAAGGTGACGAATTCTGGCATATGACGAAAGTATTGAGGTTGAGCGACAATGACAGGGTGGAGCTCTTCAATGGGAAGGGAGGTCTGGTAGAAGGATATATACAGAACATTGACCGCAGTGGACTTGATTTTGTTGCACTGAAGGATCCAAAGTTAGCACCTCAACAGAATACCCAATTGCATGACCATGCCTGTTTAGGTACTCTGAAGGGTGGTCGTTCTGACTGGCTTGTAGAGAAGTGCACAGAGCTTGGAGCCAGTAGTGTAACTCCTCTATTGACTGAACGTTCTCCATCAATCTCAGAAGGTCGTGCAGATAGATTGGAACGTGTCATTTTAGCAGCATCCAAACAATGTCAACGACTGCATGAAATGGTCCTGAAACCTCCTGAAGAGATTGGTGAAGTTTTGCATCATATTGAACAATCAAAGCTTTCTCTTCTCGCAACAGCAAAGGCAACTCCTGTTCTTAGTGCATTGATGTCATTGGAGAAGGAAACTAGTGGCTTAATCATAATTGGACCAGAAGGCGACTTCACTGTGAAAGAAGCGAGCATGATGGTGGAAGCAGGTGCTACAAGTGTTAGTCTTGGACCACATCGACTTCGTGTTGAAACTGCCACAATAGCACTTTTGTCAACTGTCATGTTATGGTCTGACTCTAAGCAAGGTTAG 987 0.4367 MLQTLAAPIRVRPLLVNNSWLRSMSVRSFCSSSNYEDQSRGGLPRFYSQTLPPSKAHKLSFYSFHNPTFHILIPFLINNATFVILTIYTPFLGWGFMKGNGVRVKGDEFWHMTKVLRLSDNDRVELFNGKGGLVEGYIQNIDRSGLDFVALKDPKLAPQQNTQLHDHACLGTLKGGRSDWLVEKCTELGASSVTPLLTERSPSISEGRADRLERVILAASKQCQRLHEMVLKPPEEIGEVLHHIEQSKLSLLATAKATPVLSALMSLEKETSGLIIIGPEGDFTVKEASMMVEAGATSVSLGPHRLRVETATIALLSTVMLWSDSKQG 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0372 328 TIGRFAM TIGR00046: RNA methyltransferase, RsmE family 101 320 IPR006700 GO:0006364|GO:0008168
Lal12g0372 328 SUPERFAMILY alpha/beta knot 163 323 IPR029028 -
Lal12g0372 328 Pfam RNA methyltransferase PUA domain 105 149 IPR046887 -
Lal12g0372 328 CDD RsmE-like 167 317 IPR046886 -
Lal12g0372 328 Pfam RNA methyltransferase domain 165 319 IPR046886 -
Lal12g0372 328 SUPERFAMILY PUA domain-like 98 148 IPR015947 -
Lal12g0372 328 PANTHER RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE E 43 326 IPR006700 GO:0006364|GO:0008168
Lal12g0372 328 Gene3D - 91 327 IPR029026 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0372 K09761 - gmx:100777253 393.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0372 12 2653678 2656669 Lal12g0372 12 2653678 2656669 ECH