Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0273 ATGGGCAGCCATAAAATTTCGCCAACAACAAATAGCCCAAAGAGAAACTCAAAAACACTTCATGACTTGTTTGTGCAAGAAAAAACTCTTTTCCCTATCCCATCTTCTCCTACTACCTCAGTAGATGAAGAAATCCTCTCTGCTATTTCTTATTGCTCCTTTGTTTTCAGCTTCACTGACCCTTCAGAATCACCTACACAAAGAGACTCAAAGCGCCTTCAACTCACGCGCCTTATCTCGATATTGAAGTCCTCAAAGAAGCCAGTGCATGAGAAAGTTTTGGAACCTTTAGTGTCCATGATCTCAAACAATCTCTTTAGACCATTCCCTCCACCTAACAACAACTTTTCTATTTCAGAATTGCATGATGAAGAAGATCATATCTCCACATTTTCACCAATTTGGTCACATCTCCAAATAGTATATGAAATTCTTATGAGGCTTGTTGTCACCACTGATCACAATATACTCAGAGAGTACCTTGATCATTCCTTCCTGCTCAAGCTACTATCACTTTTCCAATCTGAGGATCCAAGGGAACGCGAGAGTTTGAAGAGTGTGTACCACAAGATATATTCTAAGTTCATTTCAGACCGTTCATTCATGAGGAAATCAATGACTGATGTAATCTTAAACTATGTGTTTGAGACAGAAAAACAACCTGGTATGGCAGAACTGCTTGAGATATGGGGAACCATAATCAATGGCTTTACCTTGCCACTCAAGGAAGAACACAAGTTGTTCCTAATGAGAGTGCTTATCCCTTTGCATAAGGCCAAAGGGATGCAAGTGTATCATAGGCAATTGGCTTATTGTGTGTTACAGTTTGTGCAGAAGGAACCTATGCTTGGAGGGGTTGTTGTTAAAGGAATATTAAGGTATTGGCCTGTCACAAACTGTTCAAAAGAGATATTGCTAATTGGGGAGTTGGAAGAGCTTGTGGAGAATTTAGACCAAGATCAATATAGTAAGTTGGCTTTGCCCTTGTGTGTCCAGATTACAAAATGCATCAACAGTTGGAATTCTCAGGTAGCAGAGCGTGCACTCTATGTATGGAATAATGAACAGTTTGTGAAAATGGCATCAACAGTAATGGTAGAAGTGTATCCTGTGATAGTAGAAGGCATAGAGAAGAACCTCAAGTGGCATTGGAGCAAGAGTGTAAAGCAACTCACAGAGAATGTGAAGATGATGCTTGAAGAAATGGATCCAGTTCTATATTCAAAGGGTGTCATGGACATGGAAACTAAAGAATCATTGGCACATCAACAAGATATGAAGAGGAAAAAAAGATGGGAAAGAATAGAATTGGAAGCTGCCAATAATGAGTTTTTCAATCCACCACATTATATATGTGTTTCACACTAA 1368 0.3925 MGSHKISPTTNSPKRNSKTLHDLFVQEKTLFPIPSSPTTSVDEEILSAISYCSFVFSFTDPSESPTQRDSKRLQLTRLISILKSSKKPVHEKVLEPLVSMISNNLFRPFPPPNNNFSISELHDEEDHISTFSPIWSHLQIVYEILMRLVVTTDHNILREYLDHSFLLKLLSLFQSEDPRERESLKSVYHKIYSKFISDRSFMRKSMTDVILNYVFETEKQPGMAELLEIWGTIINGFTLPLKEEHKLFLMRVLIPLHKAKGMQVYHRQLAYCVLQFVQKEPMLGGVVVKGILRYWPVTNCSKEILLIGELEELVENLDQDQYSKLALPLCVQITKCINSWNSQVAERALYVWNNEQFVKMASTVMVEVYPVIVEGIEKNLKWHWSKSVKQLTENVKMMLEEMDPVLYSKGVMDMETKESLAHQQDMKRKKRWERIELEAANNEFFNPPHYICVSH 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0273 455 PIRSF PP2A_B56 3 450 IPR002554 GO:0000159|GO:0007165|GO:0019888
Lal12g0273 455 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 34 439 IPR002554 GO:0000159|GO:0007165|GO:0019888
Lal12g0273 455 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 440 IPR002554 GO:0000159|GO:0007165|GO:0019888
Lal12g0273 455 Gene3D - 37 437 IPR011989 -
Lal12g0273 455 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT 1 440 - -
Lal12g0273 455 SUPERFAMILY ARM repeat 45 434 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0273 Lal-Chr12 1950292 1951974 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0273 K11584 - gmx:100802007 693.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0273 12 1950292 1951974 Lal12g0273 12 1950292 1951974 ECH