Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0069 ATGGGTATTCAAGATGACTTGTATTTGAACAACAATTTGTTATCATTGTATGCTAAGTGCTTCGGAAATGTAACTGCACGTCATTTATTTGATGAAATGCCTTACAGGGATGTTGTGTCTTGGACTACACTTCTGTCTGCTCATACCAGGAACAAGCAACATTTTGAGGCCCTTGAGTTGTTTGACATGATGCTAGGTTCAGGTCAACGCCCCAACGAGTTCACTTTGTCCAGTGCCTTAAGATCATGTTCTGCTTTAGGAGAGTTTGAGCGTGGGGTGAAAATTCATGCCTCTGTGGTCAAGCTTGGATTGGACCTGAATCCGGTTCTCCGTACCAATTTGATTGATTTATATACCAAGTGTGATTGTACTGTGGAAGCGTATAAGTTGCTTGCATTTGTGGATGACGGTGATATTGTGTCTTGGACAACAATGATCTCTTCGTTAGTTGAGACTAGGAAATGGATTGAAGCTCTACAAATCTATGTCAAAATGATTGAAGCTGGAGTTTACCCAAATGAGTTCACATTTGTTAAACTCTTAGGCATGTCTTCTTTTCTTGGTTTGGGTTTTGGAAAACTACTGCATGCGCAGTTGATAAGATATGGTATTGAATTGAATGTGGTGTTGAAGACGGCCATTGTTGATATGTATACAAAATACAGACAGATGGAATATGCTATTAAGGTCTCAAATCTAACACCTGAATACGATGTGTTCTTATGGACCACCATTATCACTGGACTCTCTCAAAGTTTATTTGTTAGAGAGGCTGTCTCTGCATTTATTGATATGCAATTGTCCGGAATTGTACCAAATAATTTTACATATGCCAGTTTATTGAATTCTTGCTCCTCAGTTTTATCACTGAACCTAGGCGAACAGTTTCATTCTCGGACTATCGTTGTTGGACTGGAGGGTGATATCTATGTTGGAAACGCTCTGATTGATATGTACATGAAATGCTCCCGCGTCACAATAAATGCTGTGAAAGTTTTTAGAGGGATAGCCTCACCAAATATCATCACTTGGACTTCTTTGATTGCTGGTTTTTCAGAACATGGTTTCGAAGAAGAATCTTTTCAGTTGTTTGCTGAGATGCAAGCAGTAGGAGTACAGCCAAATTCCTTTACACTGTCTACTATCCTTGGAGCTTGCAGTAAAATGACCTCTATTGCTCAAACAAAGAAACACCATCCATATATCATAAAAACAAAAGCAGATGATGATATGGTTGTTGCAAATGCTCTTGTAGATGCTTATGCTGGAGGAGGGATGACAGATGAAGCATGGCGTGTTATTGGCATGATGAATCATAGAGACCCTATCACGTACACAAGTTTAGCATCAAGATTAAACCAGAGAGGGGATCATGAAATGGCATTACAAGTTATCACGCACATGTGTCATGATGAGGTTAAGATGGACGAATTTAGTCTGGCAAGTTTTTTATCAGCTGCAGCTGCCTTAGGCACGATGGAAACTGGAAAGCAGCTACATTGTTATTGTGTCAAATCAGGTTTCGACAAATGCAACTCAGTTTCAAATAGCTTAGTCCACTTGTACAGCAAATGTGGTAGTATGCAGGATGCATACAGAGCTTTCAAAAATATAAATGAGCCAGATGCAGTGTCATGGAATGGTTTCATATCTGGATTAGCATCAAATGGATATATATCATATGCTCTTTCTGCATTCGATGACATGAGGCTAGCAGGAGTTAAACCTGATTCTGTTACATTCTTGACCCTAATTTTTGCCTGCAGTCATGGTGGTTTGTTTGATCTTGGCCTTGATTATTTCCATTCTATGGAAAAAACATATGATGTGGTACCGAAGTTGGATCACTATGCATGTTTAGTTGATCTTCTTGGTAGGGCTGGTCGCTTAGAGGAAGCAATGATTGTTATTGAAACAATGCCTTTCAGACCAGACTCTCTAGTCTATAAAACTCTATTAAATGCTTGCAAGTTACATAGAAATGTACCCCTGGGAGAAGATATGGCAAGGAGATGTCTTGAGCTTGATCCATATGATCCTGCAATATATTTGATGCTGGCAAACTTGTATGACAACGCCGGACTCTCTGACTTTGGCGAGAAGACTCGCAGGCTGATGAGAGAAAGGGGTTTGAGAAGAAGTCCTGGAAAGTGCTGGATAGAGGTAAGAAGCAACATTCATCTCTTCTCTACTGGACAGACATCACACCCCATGATAGATGAGATTAATGAAAAACTGGAGCTTCTTATAACCGAGCTTAAGTATCAAGGGTATAGATACCAAGAGAATCATGATAAGTTATACCACTCAGAGCAATTAGCTGTTGCATTTGGTCTTCTTAGTTTACCAACTATGGCTCCAATACACATAAACAAGAATTCACTTATCTGCTTACACTGCCATGACTTCATAATGCTTGTGACACAAGTGGTTGGAAGGGAGATAACTGTGAGGGATGGAAAAAGATTCCATGTCTTTAACAATGGCCAATGTTCATGCAGAGGTAATTGA 2511 0.3971 MGIQDDLYLNNNLLSLYAKCFGNVTARHLFDEMPYRDVVSWTTLLSAHTRNKQHFEALELFDMMLGSGQRPNEFTLSSALRSCSALGEFERGVKIHASVVKLGLDLNPVLRTNLIDLYTKCDCTVEAYKLLAFVDDGDIVSWTTMISSLVETRKWIEALQIYVKMIEAGVYPNEFTFVKLLGMSSFLGLGFGKLLHAQLIRYGIELNVVLKTAIVDMYTKYRQMEYAIKVSNLTPEYDVFLWTTIITGLSQSLFVREAVSAFIDMQLSGIVPNNFTYASLLNSCSSVLSLNLGEQFHSRTIVVGLEGDIYVGNALIDMYMKCSRVTINAVKVFRGIASPNIITWTSLIAGFSEHGFEEESFQLFAEMQAVGVQPNSFTLSTILGACSKMTSIAQTKKHHPYIIKTKADDDMVVANALVDAYAGGGMTDEAWRVIGMMNHRDPITYTSLASRLNQRGDHEMALQVITHMCHDEVKMDEFSLASFLSAAAALGTMETGKQLHCYCVKSGFDKCNSVSNSLVHLYSKCGSMQDAYRAFKNINEPDAVSWNGFISGLASNGYISYALSAFDDMRLAGVKPDSVTFLTLIFACSHGGLFDLGLDYFHSMEKTYDVVPKLDHYACLVDLLGRAGRLEEAMIVIETMPFRPDSLVYKTLLNACKLHRNVPLGEDMARRCLELDPYDPAIYLMLANLYDNAGLSDFGEKTRRLMRERGLRRSPGKCWIEVRSNIHLFSTGQTSHPMIDEINEKLELLITELKYQGYRYQENHDKLYHSEQLAVAFGLLSLPTMAPIHINKNSLICLHCHDFIMLVTQVVGREITVRDGKRFHVFNNGQCSCRGN 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0069 836 Gene3D Tetratricopeptide repeat domain 92 190 IPR011990 GO:0005515
Lal12g0069 836 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 340 374 IPR002885 -
Lal12g0069 836 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 542 576 IPR002885 -
Lal12g0069 836 Pfam DYW family of nucleic acid deaminases 767 835 IPR032867 GO:0008270
Lal12g0069 836 Gene3D Tetratricopeptide repeat domain 1 91 IPR011990 GO:0005515
Lal12g0069 836 Gene3D Tetratricopeptide repeat domain 404 515 IPR011990 GO:0005515
Lal12g0069 836 Gene3D Tetratricopeptide repeat domain 516 749 IPR011990 GO:0005515
Lal12g0069 836 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 37 71 IPR002885 -
Lal12g0069 836 TIGRFAM PPR: pentatricopeptide repeat domain 39 73 IPR002885 -
Lal12g0069 836 TIGRFAM PPR: pentatricopeptide repeat domain 342 375 IPR002885 -
Lal12g0069 836 TIGRFAM PPR: pentatricopeptide repeat domain 140 174 IPR002885 -
Lal12g0069 836 TIGRFAM PPR: pentatricopeptide repeat domain 544 578 IPR002885 -
Lal12g0069 836 Gene3D Tetratricopeptide repeat domain 290 403 IPR011990 GO:0005515
Lal12g0069 836 Gene3D Tetratricopeptide repeat domain 193 289 IPR011990 GO:0005515
Lal12g0069 836 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 238 272 IPR002885 -
Lal12g0069 836 Pfam E motif 659 721 IPR046848 -
Lal12g0069 836 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 189 486 - -
Lal12g0069 836 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 69 389 - -
Lal12g0069 836 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 270 732 - -
Lal12g0069 836 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 5 188 - -
Lal12g0069 836 Pfam PPR repeat family 541 588 IPR002885 -
Lal12g0069 836 Pfam PPR repeat family 36 83 IPR002885 -
Lal12g0069 836 Pfam PPR repeat family 138 181 IPR002885 -
Lal12g0069 836 Pfam PPR repeat family 238 285 IPR002885 -
Lal12g0069 836 Pfam PPR repeat family 339 387 IPR002885 -
Lal12g0069 836 Pfam PPR repeat 516 536 IPR002885 -
Lal12g0069 836 Pfam PPR repeat 617 640 IPR002885 -
Lal12g0069 836 Pfam PPR repeat 413 438 IPR002885 -
Lal12g0069 836 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 138 172 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0069 Lal-Chr12 443869 446379 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0069 57 833 Glycoside Hydrolase AT3G49170 34.491 1.33e-160 488
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0069 - - gmx:100791770 1301.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0069 12 443869 446379 Lal12g0069 12 443869 446379 ECH