Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0065 GTGATTGGTGTGATCTCAATTATTGTGATATTGGTATCAGTGGCAGAATGCCGTGCGGTACAATATGAAGCAATCAATTGCAGAAAGCACATTGCAGTTTTAACAGATTTTGGTGCTGTTGGAGATGGCAAAACATCCAACACAAAGGTTTTTAACGCAGTAATAAAAAACCTCAGCCAGTATGAAAATGATGGTGGTGCACTTCTTGTTGTGCCACCTGGCAAATGGTTAACCGGGAGCTTTAATCTCACAAGCCATTTCACTCTTTTTCTCCAAAAGGATGCTGTCATTCTTGCATCTCAGGATGAATCAGAATGGCCTTCACTTCCTGTTCTACCATCATATGGAAGAGGAAGAGATGCACCTGCAGGAAGGTTCAGTAGTCTCATTTTTGGGACTAACCTCACTGATGTTATTATTACAGGTACCAATGGGACAATCGATGGTCAAGGATCTTATTGGTGGGGCAAGTTCAAAAAGAAGGAATTAACACTCACTAGGCCATACATGATTGAAATCATGTACTCTAGTGAAATCCAAATATCAAATCTCACTCTGGTGAACTCCCCATCTTGGTTTGTCCATCCAATTTACAGCAGTAACATAATAATTCAAGGGCTCACCATTCTTGCACCAGTGGACTCTCCCAATACAGATGGGATAGATCCAGATTCATGTACTAACACTAAGATCCAAGAATGCTACATTGTATCCGGTGATGATTGTGTTGCAGTAAAGAGTGGTTGGGATGAGTATGGAATTAAAGTTGGAATGCCAACCCAACATCTAATCATTAGAAGGCTTACTTGTATATCTCCAGATAGTGCTATGATTGCATTAGGAAGTGAAATGTCTGGTGGAATCAAAGATGTTAGAGCTGAAGACAACACAGCTATCAATACTGAATCAGCTGTTAGAATCAAAACTGCAGTTGGTAGAGGAGCATATGTTAAGGACATTTTTGTTAAAGGAATGACCTTGAAAACCATGAAGTATGTATTTTGGATGACTGGTGCTTATGGATCTCATGCTGATTCTGGCTTTGATCCCAAAGCACTTCCTGAAATTACTCGAATAAATTATAGAGACATTACAGCAGATAATGTCACATATGCAGCAAGACTTGATGGAATTACAAATGATCCTTTCACAGGAATCTGCATCTCTAATGTCCATATCAAAGTGAGTGCAGCGAAAAAGAAACTTCAGTGGAATTGCACAAATATTGCTGGAGTCACAAACAATGTCACTCCTCAGCCATGTAGTTTGCTGCCTCAGAAGGAAGGACAGTCCTGTTCTTATCCAAAGGACATACTTCCCATTGACAATGTTCAGTTGAAGACTTGTTCCTTATGA 1356 0.399 VIGVISIIVILVSVAECRAVQYEAINCRKHIAVLTDFGAVGDGKTSNTKVFNAVIKNLSQYENDGGALLVVPPGKWLTGSFNLTSHFTLFLQKDAVILASQDESEWPSLPVLPSYGRGRDAPAGRFSSLIFGTNLTDVIITGTNGTIDGQGSYWWGKFKKKELTLTRPYMIEIMYSSEIQISNLTLVNSPSWFVHPIYSSNIIIQGLTILAPVDSPNTDGIDPDSCTNTKIQECYIVSGDDCVAVKSGWDEYGIKVGMPTQHLIIRRLTCISPDSAMIALGSEMSGGIKDVRAEDNTAINTESAVRIKTAVGRGAYVKDIFVKGMTLKTMKYVFWMTGAYGSHADSGFDPKALPEITRINYRDITADNVTYAARLDGITNDPFTGICISNVHIKVSAAKKKLQWNCTNIAGVTNNVTPQPCSLLPQKEGQSCSYPKDILPIDNVQLKTCSL 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0065 451 Gene3D - 12 419 IPR012334 -
Lal12g0065 451 PANTHER ENDO-POLYGALACTURONASE-LIKE PROTEIN 13 450 - -
Lal12g0065 451 SUPERFAMILY Pectin lyase-like 27 434 IPR011050 -
Lal12g0065 451 Pfam Glycosyl hydrolases family 28 129 410 IPR000743 GO:0004650|GO:0005975
Lal12g0065 451 PANTHER PECTIN LYASE-RELATED 13 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0065 Lal-Chr12 428474 430723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0065 20 451 Glycoside Hydrolase AT3G48950 70.709 0.0 668
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0065 - - adu:107466830 746.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0065 12 428474 430723 Lal12g0065 12 428474 430723 ECH