Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0044 ATGGGTAAACAAAAACAACAAGTCATTTCCCGTTTTTTCGCACCCAAATCCCAAACCCCTTCTTCACCCACCGCTTCCTCTAACCCCAATCCTCCAACTCCCAAAAAAATCACCGCGACCGCCAGTTTCTCTCCATCCAAACGCGCCCTAACTTCTCAACTAACTCCCTCTCCCAAACCACCCAAATTCCCAAAACTACCCTCTCAACCCGATCCTTCTCTCCACCAGCGCTTCCTCAACAAGCTTCTAGAACCTTCCACCGACCCTCCACAAACCCACCACTCTTCCAAACCGTTAAAATACACTCCGTTACTGCAACAAGTAGTGGAACTCAAACGTAACTACCCTGACGTTCTCTTAATGATTGAAGTTGGTTACAGATACCGTTTTTTCGGCGAAGATGCTGAAAATGCTGCTAAGGTTTTAGGTATATATTCACACATGGATCATGATTTTTTAACCGCTAGCATACCAACTTTTCGATTAAATGTCCATGTGAGGAGGCTTGTGAACGCTGGCTATAAAGTTGGTGTGGTTAAGCAGACTGAGACTGCAGCCATTAAGGCTCATGGTTCAAACCGGTTAGGTCCGTTCTGTAGAGGTTTGTCGGCCTTGTACACCAAGGCTACATTAGAGGCGGCAATGGATATAGGGGGAGCGGAAGAAGGGTGTGGTGGAGAGAGTAATTACTTGATGTGTGTTGTGGAGAAGAGTGTTCTGAGAGAGAAATTGAATCGTACAGTGGAGAGTGATTTTGATGTGAGCATTGGATTTGTTGCTGTGGAGATATCAACAGGGGATGTGGTTTATGGAGAGTTCAATGATAACTTTCTAAGGAGCGCGCTCGAGGCTGTGGTTTTGAGTTTGTCTCCTGCTGAGTTGCTTCTTGGGGACCCTCTTTCCAACCAAACAGAGAAGTTATTGCTGGCTTTTGCTGGACCTGCTTCAAATGTTCGCATGGAGCGAGCCTCACAAGATTGCTTCACTAATGGAGGTGCTCTTGCTGATGTTATGACCTTGTTTGAGAACATGGATGCAGGCAGTCCATCAGATCCAATGAAAAGTAATGATTTGGCTGAGTGCAGAAGTCAGCAGTTGGTAGTTAAGGACATTATGAACATGCCTGATTTGGCTGTCCAAGCTTTGGCCTTAACTATTCGGCATTTAAAGGAATTTGGTTTTGAAAGTACTCTATGTTCAGGAGCTTCTTTAAGGCCCTTCTCAAGCAATATGGAAATGACCCTCTCCGCCAATGCACTTCAACAATTGGAGGTTTTAAAGAATAGCAATGATGGATCTGAGAGTGGTTCCTTGCTGCGGATTATGAATCATACTCTTACTATATTTGGTTCCAGACTTCTTAGGCACTGGGTATCTCACCCATTGTGTGATCGAGCCTTGATTTCTGCTCGTCTTCATGCTGTATCTGAAATCGCAGAGTCCATGGGATCTTGTAACGGTATGAAGAATATTGGATATGATGAGGAAGAATATGATGTAACAGCTGTACGCCCCGAGTTAGCTTACATACTGTCGTTGGTTTTGACAACTCTGGGTCGCACACCTGATATACAGCGTGGGATTACAAGAATTTTCCATCGCACTGCTACCCCATCTGAGTTTGTTGCAGTTATTCAAGCTATTTTGTCTGCCGGAAAACAGCTTCAGCAGCTTAACATAGGAGAGGACGACAATAATACATTGCACTCTAATCTGTTGAAAAAGTTAATTTTGACTGCTTCCTCTGCCAGTGTTATTGGTAATGCTGCAAAAATGTTGTCATCTTTAAACACAAACTCTGCTGATCAAGGTGATCTAACAAATTTGATCATTGCATCTGAGGGACAATTTGTAGAGGTATTTACAGCTCGGAAGAATTTTCAGATGGCCAGTGAACAATTAGATTCGCTGATTGCATTGTACCGCAAGCAGTTTGGAATGCGAAGTTTGGAATTCATGAGTGTTTCTGGAACAACTCATTTGATAGAGTTATCTACTGAAGTAAAGGTGCCATTCAACTGGGTTAAGGTAAATAGCACAAAGAAAACAATACGATATCATCCTCCTGAAGTAGTGGCAGCATTAGACAAGTTATCATTAGCAAAAGAGGAGCTTATTGTTGCCTGCCGAGCTGCTTGGGATAGCTTTCTAAGGGACTACAGTAAACACTATCCTGAGTTCCAAGCTGCTGTTCAAGCACTAGCTGCTTTAGATTGTCTGCATTCACTTGCCATTCTTTCAAAAAATAAGGGGTATGTCCGTCCTGTGTTTGTAGGTGATAACGAGCCTGTTCACATACAAATTTGTTCTGGTCGACATCCAGTTTTGGAGACTACCTTACAAGACAATTTTGTCCCAAATGATACAAATATGCATGCAGACAGAGAGTACTGTCAGATTATTACTGGGCCCAATATGGGGGGTAAAAGTTGCTATATTCGCCAGGTGGCTTTGATCGCTATAATGGCTCAGGTTGGTTCCTTTGTACCAGCATCATCAGCAAAACTGCATGTCCTGGATGGGATCTACACCCGAATGGGTGCTTCTGACAGTATTCAGCAAGGGAGAAGCACCTTCCTGGAAGAACTAAGTGAGACTTCACATATACTTCATAGCTGCACAGGACATTCACTGGTTATCATTGATGAGCTTGGGAGAGGTACTAGTACACATGATGGTATGGCCATTGCATATGCGACATTGCATTATCTTCTAAAGCAAAAAAGAAGCATGGTCCTCTTTGTCACTCACTATCCAAAGATTGCCGACCTCAGAACTGAATTTCCAGGCTCCGTGGGAGCATATTATGTATCACATCTGACCACATACGATGATACAAGTAAAACTTCCAATTTGGATCATGAAGATATCACTTATCTATACAAGCTTGTACCTGGTGTTTCAGAGAGGAGTTTTGGATTTAAGGTGGCCCAGCTTGCACAGCTACCACCACATTGCATTAGTCGTGCCATTGTCATGGCTTCCAAATTAGAAGCACTGGTAAACAATAGAATACATAGTAGATCAGGAAGGGAGCTACTGTTGGATGCATTGGTAACTGATCAAGAGCAAGAACCACATTCGCTTATGTCTCAACCACACGATTGCCCAAGTCAAGAATTTGATAACGCTTGCAAGGAATTCTATTCAAACTTAAAAGCTGCAACACTAGATGATGATGACCATGCAAAAAGCTTTCAACTTTTGGAGCATGCTAGAAGCATTGCAAAGAAATTAATTGCAGATGAAGGCAAATAG 3258 0.4297 MGKQKQQVISRFFAPKSQTPSSPTASSNPNPPTPKKITATASFSPSKRALTSQLTPSPKPPKFPKLPSQPDPSLHQRFLNKLLEPSTDPPQTHHSSKPLKYTPLLQQVVELKRNYPDVLLMIEVGYRYRFFGEDAENAAKVLGIYSHMDHDFLTASIPTFRLNVHVRRLVNAGYKVGVVKQTETAAIKAHGSNRLGPFCRGLSALYTKATLEAAMDIGGAEEGCGGESNYLMCVVEKSVLREKLNRTVESDFDVSIGFVAVEISTGDVVYGEFNDNFLRSALEAVVLSLSPAELLLGDPLSNQTEKLLLAFAGPASNVRMERASQDCFTNGGALADVMTLFENMDAGSPSDPMKSNDLAECRSQQLVVKDIMNMPDLAVQALALTIRHLKEFGFESTLCSGASLRPFSSNMEMTLSANALQQLEVLKNSNDGSESGSLLRIMNHTLTIFGSRLLRHWVSHPLCDRALISARLHAVSEIAESMGSCNGMKNIGYDEEEYDVTAVRPELAYILSLVLTTLGRTPDIQRGITRIFHRTATPSEFVAVIQAILSAGKQLQQLNIGEDDNNTLHSNLLKKLILTASSASVIGNAAKMLSSLNTNSADQGDLTNLIIASEGQFVEVFTARKNFQMASEQLDSLIALYRKQFGMRSLEFMSVSGTTHLIELSTEVKVPFNWVKVNSTKKTIRYHPPEVVAALDKLSLAKEELIVACRAAWDSFLRDYSKHYPEFQAAVQALAALDCLHSLAILSKNKGYVRPVFVGDNEPVHIQICSGRHPVLETTLQDNFVPNDTNMHADREYCQIITGPNMGGKSCYIRQVALIAIMAQVGSFVPASSAKLHVLDGIYTRMGASDSIQQGRSTFLEELSETSHILHSCTGHSLVIIDELGRGTSTHDGMAIAYATLHYLLKQKRSMVLFVTHYPKIADLRTEFPGSVGAYYVSHLTTYDDTSKTSNLDHEDITYLYKLVPGVSERSFGFKVAQLAQLPPHCISRAIVMASKLEALVNNRIHSRSGRELLLDALVTDQEQEPHSLMSQPHDCPSQEFDNACKEFYSNLKAATLDDDDHAKSFQLLEHARSIAKKLIADEGK 1085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0044 1085 ProSitePatterns DNA mismatch repair proteins mutS family signature. 877 893 IPR000432 GO:0005524|GO:0006298|GO:0030983
Lal12g0044 1085 Pfam MutS domain I 102 212 IPR007695 GO:0005524|GO:0006298|GO:0030983
Lal12g0044 1085 SUPERFAMILY DNA repair protein MutS, domain II 226 308 IPR036678 GO:0005524|GO:0006298|GO:0030983
Lal12g0044 1085 MobiDBLite consensus disorder prediction 31 56 - -
Lal12g0044 1085 Gene3D - 752 1028 IPR027417 -
Lal12g0044 1085 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 76 1079 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Lal12g0044 1085 PANTHER DNA MISMATCH REPAIR PROTEIN MSH3 76 1079 - -
Lal12g0044 1085 Pfam MutS domain III 418 744 IPR007696 GO:0005524|GO:0006298|GO:0030983
Lal12g0044 1085 SUPERFAMILY DNA repair protein MutS, domain III 417 749 IPR036187 -
Lal12g0044 1085 SMART DNAend 433 779 IPR007696 GO:0005524|GO:0006298|GO:0030983
Lal12g0044 1085 SUPERFAMILY DNA repair protein MutS, domain I 93 210 IPR016151 GO:0005524|GO:0006298|GO:0030983
Lal12g0044 1085 MobiDBLite consensus disorder prediction 1 24 - -
Lal12g0044 1085 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 752 998 IPR027417 -
Lal12g0044 1085 Gene3D - 415 744 - -
Lal12g0044 1085 Gene3D DNA repair protein MutS, domain I 90 221 IPR016151 GO:0005524|GO:0006298|GO:0030983
Lal12g0044 1085 Gene3D - 594 720 - -
Lal12g0044 1085 PIRSF Msh6 3 76 IPR017261 GO:0006298|GO:0030983
Lal12g0044 1085 PIRSF Msh6 88 1059 IPR017261 GO:0006298|GO:0030983
Lal12g0044 1085 Pfam MutS domain II 229 318 IPR007860 GO:0005524|GO:0006298|GO:0030983
Lal12g0044 1085 Pfam MutS domain V 799 998 IPR000432 GO:0005524|GO:0006298|GO:0030983
Lal12g0044 1085 Gene3D MutS, connector domain 225 412 IPR036678 GO:0005524|GO:0006298|GO:0030983
Lal12g0044 1085 SMART mutATP5 796 995 IPR000432 GO:0005524|GO:0006298|GO:0030983
Lal12g0044 1085 MobiDBLite consensus disorder prediction 1 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0044 Lal-Chr12 306319 315437 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0044 K08736 - gmx:100789883 1614.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0044 12 306319 315437 Lal12g0044 12 306319 315437 ECH