Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0040 ATGGCAGACGACGACTATGATGACGTTGATATGGGGTATGAAGAGGAGCCACCGGAGCCTGAGATTGAAGAAGGTGAAGAGGAGGATGTGGATGCCAACAAAAATGAAGAGGAAACTGGAGAACCTCTTGTGACTGAGGACAAGGAAGATGAGCAACCTGTGGAGCGGCCTCGGAAGACGTCTAAATATATGACCAAGTATGAGCGTGCTAGGATTTTGGGTACCCGTGCTTTGCAAATCAGTATGAATGCACCTGTCATGGTCGAGCTGGAGGGCGAGACTGACCCACTTGAGATTGCTATGAAGGAGCTTCGAGAGCGGAAGATACCCTTTACCATCCGTCGCTACTTGCCTGATGGAAGCTATGAAGATTGGGGAGTTGATGAACTGATTGTTGAAGACTCCTGGAAGAGGCAAGTTGGAGGTGAATGA 432 0.4907 MADDDYDDVDMGYEEEPPEPEIEEGEEEDVDANKNEEETGEPLVTEDKEDEQPVERPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGE 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0040 143 MobiDBLite consensus disorder prediction 1 35 - -
Lal12g0040 143 SMART RNA_pol_Rpb6_2 58 111 IPR006110 GO:0003677|GO:0003899|GO:0006351
Lal12g0040 143 Hamap DNA-directed RNA polymerase subunit Rpo6 [rpo6]. 62 117 IPR006111 GO:0003677|GO:0003899|GO:0006351
Lal12g0040 143 PANTHER DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 1 143 - -
Lal12g0040 143 Gene3D - 3 134 IPR036161 GO:0003677|GO:0003899|GO:0006351
Lal12g0040 143 PIRSF RPB6 1 134 IPR028363 GO:0003899|GO:0005634|GO:0005665|GO:0006351
Lal12g0040 143 PIRSF RpoK/RPB6 1 134 IPR006111 GO:0003677|GO:0003899|GO:0006351
Lal12g0040 143 PANTHER DNA-DIRECTED RNA POLYMERASES II AND V SUBUNIT 6B 1 143 - -
Lal12g0040 143 SUPERFAMILY RPB6/omega subunit-like 1 133 IPR036161 GO:0003677|GO:0003899|GO:0006351
Lal12g0040 143 ProSitePatterns RNA polymerases K / 14 to 18 Kd subunits signature. 65 79 IPR020708 GO:0003677|GO:0003899|GO:0006351
Lal12g0040 143 Pfam RNA polymerase Rpb6 60 111 IPR006110 GO:0003677|GO:0003899|GO:0006351
Lal12g0040 143 MobiDBLite consensus disorder prediction 36 61 - -
Lal12g0040 143 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0040 Lal-Chr12 282831 285847 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0040 K03014 - gmx:100794926 236.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0040 12 282831 285847 Lal12g0040 12 282831 285847 ECH
Lal12g0040 12 282831 285847 Lal24g0035 24 239296 241322 LSH