Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0030 ATGAATAAAGCTAATAATTCTGTGAAATGGGTTCTCTTGGATTTCATTCAAAAGTGCAATAACTTGAGATCCTTCAAGAAAATTCATGCACACCTATTGACTTCTGGCCATGTTGCCAATGACCTTGTTCTCACCAAAGTTTCTAACTTTTTTGGAAAACATGTCACTGATCTCCATTACCCTTGCAATTTCTTGAAGCATTTTGATTGGAAATTGAGCTCTTTCCCTTGCAATTTGGTTATTTCTGGATATGGTGCTGGCCACTTCCCCTGGGCTGCAATCCTAGTTTATAGATTTGTTGTGAGAAATGGGTTTGTGCCTGATGTGTACACTGTTCCTGCAGTTTTGAAATCATGTGCTAAGTTTAAAGGGATTAAGGAGGTTACACAGTTTCAGTGTTTAGTTGTCAGGACTGGTTTGTGGTGTGACATTTATGTTCAGAACAGTCTTGTCCATGTTTATAGCATTTGTGGTGGCACTTCTTCTGCTGTTAAGGTGTTTGATGATATGCTTGTGAGAGATGTGGTCTCTTGGACTGGTTTGATATCTGGTTATGTCAAGGCTGAGTTATTTTATAATGCCATTGCATTGTTTCTGAGGATGGATGTGGAGCCTAATGTGGCTACATTTGTTAGCATTATTGGGGCTTGTGGGAAGCTGAGTTTTTTAAATTTGGGAAAAGGGATTCATGGGCTGGTTACTAAATGTCCACATGGGAAGGAATTGGTGGTAAGCAACTCTTTGATGGATATGTATATGAAATGTGAGTCTGTTACTGATGCAAAGCGAATATTCAATGAGATACCTGAAAAGGACGTTATTTCTTGGACTAGTATGATAAGTGGATTGGTGCAATGTCAGCGTCCTAGGGAATCAATAGACTTGTTCTGTGAAATGCAGGCTTCGGGTTTTGAGCCTGACGGGATTATACTAACCAGTGTGCTTTCTGCTTGTGCCGGTCTCGGGCTTCTTGATTATGGAAGATGGGTCCATGAATACATTGATCATAGCCGTATCAAATGGGATGTTCATATAGGTACAGCATTGGTTGACATGTACGCAAAATGTGGTTGCATAGAGATGGCACAGCGTATTTTTAATGAGATGCCTTCTAAGAATATCCGTACTTGGAATGCCTATCTAGGTGGTTTAGCATTACATGGGCATGGACAAGAAGCGTTGAAACAATTTGGAGAATTGATTGAATCCGGTACAAGGCTTAATGAGGTGACATTTCTAGCAGTCTTTACAGCATGCTGCCATTCTGGTTTGGTTGATGAAGGCCGTAGGTATTTCAAAGAGATGACAAGTCCAAGCTACAAATTTTCTCCCTGGTTAGAGCACTATGGATGTATGGTTGATTTACTCTGCAGGGCTGGATTGGTGGGGGAAGCTATGGAGTTGATAAAGACAATGCCCATGCCACCTGATGTGCAGATCATAGGAGCTCTTTTGAGCGCCTGCAATACCTATGGAAACACTGGATTTTCTCAAGAAATGTTGAAATCTCTTCAGAAATTCGAATACCAAGATAGTGGCATATATGTGCTTCTATCTAATTTATATGCAACTAATAAGAATTGGGGTGAAGTGAGAAGTTTGAGGAGACTGATGAAAGAGAAAGGAATAAGCAAGGCTCCAGGTTCTAGCCTTATAAGGGTGGATGGTAAGAGTCATGAATTTTTAGTTGGAGATAACAAACATCCTCAAAGTGAGGATATTCATGTACTACTAAACATCCTTGTCAATCAAATCTACCTTGAGGGGAATATCAATACCATTTCCTGA 1788 0.4021 MNKANNSVKWVLLDFIQKCNNLRSFKKIHAHLLTSGHVANDLVLTKVSNFFGKHVTDLHYPCNFLKHFDWKLSSFPCNLVISGYGAGHFPWAAILVYRFVVRNGFVPDVYTVPAVLKSCAKFKGIKEVTQFQCLVVRTGLWCDIYVQNSLVHVYSICGGTSSAVKVFDDMLVRDVVSWTGLISGYVKAELFYNAIALFLRMDVEPNVATFVSIIGACGKLSFLNLGKGIHGLVTKCPHGKELVVSNSLMDMYMKCESVTDAKRIFNEIPEKDVISWTSMISGLVQCQRPRESIDLFCEMQASGFEPDGIILTSVLSACAGLGLLDYGRWVHEYIDHSRIKWDVHIGTALVDMYAKCGCIEMAQRIFNEMPSKNIRTWNAYLGGLALHGHGQEALKQFGELIESGTRLNEVTFLAVFTACCHSGLVDEGRRYFKEMTSPSYKFSPWLEHYGCMVDLLCRAGLVGEAMELIKTMPMPPDVQIIGALLSACNTYGNTGFSQEMLKSLQKFEYQDSGIYVLLSNLYATNKNWGEVRSLRRLMKEKGISKAPGSSLIRVDGKSHEFLVGDNKHPQSEDIHVLLNILVNQIYLEGNINTIS 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0030 595 Gene3D Tetratricopeptide repeat domain 76 238 IPR011990 GO:0005515
Lal12g0030 595 Gene3D Tetratricopeptide repeat domain 440 557 IPR011990 GO:0005515
Lal12g0030 595 Gene3D Tetratricopeptide repeat domain 324 439 IPR011990 GO:0005515
Lal12g0030 595 Pfam PPR repeat family 372 421 IPR002885 -
Lal12g0030 595 Pfam PPR repeat family 271 319 IPR002885 -
Lal12g0030 595 Pfam PPR repeat 148 174 IPR002885 -
Lal12g0030 595 Pfam PPR repeat 176 201 IPR002885 -
Lal12g0030 595 Pfam PPR repeat 448 472 IPR002885 -
Lal12g0030 595 Gene3D Tetratricopeptide repeat domain 239 323 IPR011990 GO:0005515
Lal12g0030 595 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 408 442 IPR002885 -
Lal12g0030 595 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 272 306 IPR002885 -
Lal12g0030 595 TIGRFAM PPR: pentatricopeptide repeat domain 274 307 IPR002885 -
Lal12g0030 595 TIGRFAM PPR: pentatricopeptide repeat domain 410 436 IPR002885 -
Lal12g0030 595 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 342 376 IPR002885 -
Lal12g0030 595 Pfam E motif 497 552 IPR046848 -
Lal12g0030 595 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 7 190 - -
Lal12g0030 595 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 257 589 - -
Lal12g0030 595 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 192 256 - -
Lal12g0030 595 PANTHER OS04G0488200 PROTEIN 7 190 - -
Lal12g0030 595 PANTHER OS04G0488200 PROTEIN 192 256 - -
Lal12g0030 595 PANTHER OS04G0488200 PROTEIN 257 589 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0030 Lal-Chr12 236917 238704 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0030 89 585 Glycoside Hydrolase AT3G49170 35.842 8.93e-101 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0030 - - ccaj:109794299 1000.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0030 12 236917 238704 Lal12g0030 12 236917 238704 ECH