Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1239 ATGGGTTTGAAGAAATTCCTAAAACCACAACTTGACTATCATCCATTAATCCCAAACCCACCACTTCCATCTCCACCACCACACACATCATCTCTTCCTCCCACTCTCACCCTCTCTCCCATCCCTCACCGCCACTACAACCACCACTACAACCACCTCCTTCTCTTCCTCAAAACCCATCTCTCTCCTCCCTTCACCCCTCTCTCTCTCCTCCACTTCCTCAAATCCAACCTCCACCACCACCCTTCCTTCTCCCACTATGACTTTCACATCTTCAATTGGGCCTCCAAAATTGATTCTTTTCGCCATACCCATCTCACTTTTCATTGGATGGTTCAGACCTTATCCATAACGCACCGTTTTGATCAACTTCGAACCCTCATTGACTTCATTGCATCAAATCCCTGTCCATGTTCTGATGGTACTATATTCTCTTGTCCTCAAATTGAACCTATTTTCAGATTTGCAATTCATGGGTATTGTAAAGTTGGGAACTTTGATGATGCCCTTTACGTGTTTGGGATAATGCTTAGGTTGATTGATGGGAGGCCTAGTGTTGCGGTTTGTAATATTTTGCTTCATGGGTTTGTGAAATGTGGGAGGTTTGATAGGGCTTTGGAGTTTTATCATGATGAGATGGTTAGACATAAGGTTAAGCCTGATGTGGTTAGTTTTAATATTTTGATTAGTGGCTATTGTCGGAATTCGCGGTTTGAGTCTGCTTTAGAGATGTTTAAGGAGATGAGGGAAATGGGGTGTGATCCAAATGTGGTTACTTTTAATACATTGATTAAGGGGTTGTTTAGAGAGGGGAAAGTTGAGGAAGGGATCGGAATGGTAAATGAGATGATTGATTTGGGATACCGGATTTCGGATGTGACTTGTGAGATTTTGGTGCATGGACTTTGTAAGGATGGAAGAGTTTTGCAAGCGTGTGAGATGTTGGTGGAGTTGACGAAAAGGGGAGTTTTGCCAAAAGGGTATGATTATTTTGGGTTGGTGGAAGTTCTGTGTGAGGAAGGAAATGTTGTTAGAGCGTTGGAGCTTATTTATGAGTTATGGGACCGAGGAAGTGTTCCGAGTTTGATTGCTTGTACTGTGATGGTTGATGGTTTAAGTAGATCGGGGAAGAGCGAAGAAGCTTTGAGGTTGGTGGAAAAGATGCTTAATAAAGAGGGTATGGTACTGGATATTGTGACTTTCAATTGTGTCCTTCAAGATATTTGCAATGTGGGAAGAACAGAAGAAGCAAATAAATTGAGATTACTTGCTTCAAGCAAGGGTTTGAAACCAGATATCATGACATATAAAATTTTGGTGACTGGGTATACAGAAGATGGCAATCGAAAGGAGGGAGAGTTAGTGGTAGATGAGATGTTGGATAAGGGATTCATACCTGATCTTGCTTCATATAATAAATTGATGAATGGATTATCTACTTGCCGACGCTCTACTCTTAAAGCCGACAAATTTGCCCCAAAGACTGTTACATCTACCGTCCCAGGTCCTACTAGGTGGGAATCTTGTGCACTGGTCGGCAACATTGGTGAACGTGGTTATGGAATGATTGAAATTACAGCTATCATATTGCTGTGA 1596 0.4211 MGLKKFLKPQLDYHPLIPNPPLPSPPPHTSSLPPTLTLSPIPHRHYNHHYNHLLLFLKTHLSPPFTPLSLLHFLKSNLHHHPSFSHYDFHIFNWASKIDSFRHTHLTFHWMVQTLSITHRFDQLRTLIDFIASNPCPCSDGTIFSCPQIEPIFRFAIHGYCKVGNFDDALYVFGIMLRLIDGRPSVAVCNILLHGFVKCGRFDRALEFYHDEMVRHKVKPDVVSFNILISGYCRNSRFESALEMFKEMREMGCDPNVVTFNTLIKGLFREGKVEEGIGMVNEMIDLGYRISDVTCEILVHGLCKDGRVLQACEMLVELTKRGVLPKGYDYFGLVEVLCEEGNVVRALELIYELWDRGSVPSLIACTVMVDGLSRSGKSEEALRLVEKMLNKEGMVLDIVTFNCVLQDICNVGRTEEANKLRLLASSKGLKPDIMTYKILVTGYTEDGNRKEGELVVDEMLDKGFIPDLASYNKLMNGLSTCRRSTLKADKFAPKTVTSTVPGPTRWESCALVGNIGERGYGMIEITAIILL 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1239 531 Pfam PPR repeat family 397 443 IPR002885 -
Lal11g1239 531 Pfam PPR repeat family 220 267 IPR002885 -
Lal11g1239 531 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 185 220 IPR002885 -
Lal11g1239 531 SUPERFAMILY HCP-like 158 295 - -
Lal11g1239 531 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 291 325 IPR002885 -
Lal11g1239 531 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 221 255 IPR002885 -
Lal11g1239 531 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 256 290 IPR002885 -
Lal11g1239 531 Gene3D Tetratricopeptide repeat domain 213 285 IPR011990 GO:0005515
Lal11g1239 531 Gene3D Tetratricopeptide repeat domain 286 354 IPR011990 GO:0005515
Lal11g1239 531 Gene3D Tetratricopeptide repeat domain 355 422 IPR011990 GO:0005515
Lal11g1239 531 Gene3D Tetratricopeptide repeat domain 74 212 IPR011990 GO:0005515
Lal11g1239 531 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 432 466 IPR002885 -
Lal11g1239 531 TIGRFAM PPR: pentatricopeptide repeat domain 188 222 IPR002885 -
Lal11g1239 531 TIGRFAM PPR: pentatricopeptide repeat domain 258 290 IPR002885 -
Lal11g1239 531 TIGRFAM PPR: pentatricopeptide repeat domain 157 178 IPR002885 -
Lal11g1239 531 TIGRFAM PPR: pentatricopeptide repeat domain 435 467 IPR002885 -
Lal11g1239 531 TIGRFAM PPR: pentatricopeptide repeat domain 293 325 IPR002885 -
Lal11g1239 531 TIGRFAM PPR: pentatricopeptide repeat domain 223 257 IPR002885 -
Lal11g1239 531 TIGRFAM PPR: pentatricopeptide repeat domain 364 397 IPR002885 -
Lal11g1239 531 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 397 431 IPR002885 -
Lal11g1239 531 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 361 391 IPR002885 -
Lal11g1239 531 Pfam PPR repeat 364 391 IPR002885 -
Lal11g1239 531 Pfam PPR repeat 157 178 IPR002885 -
Lal11g1239 531 Pfam PPR repeat 188 210 IPR002885 -
Lal11g1239 531 Pfam PPR repeat 293 323 IPR002885 -
Lal11g1239 531 PANTHER ATPASE EXPRESSION PROTEIN 3 15 483 - -
Lal11g1239 531 Gene3D Tetratricopeptide repeat domain 423 501 IPR011990 GO:0005515
Lal11g1239 531 PANTHER FERTILITY RESTORER HOMOLOGUE A-LIKE 15 483 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1239 49 504 Miscellaneous Gene Families AT4G11690 28.118 2.39e-45 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1239 - - aprc:113860936 652.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1239 11 16142691 16144368 Lal11g1239 11 16142691 16144368 ECH