Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1199 ATGGCGGAACATCTCGCATCGATTTTTGGCACTGAGAAAGACAGAGTGAACTGTCCATTCTACTTTAAGATCGGAGCTTGTAGACATGGAGATCGTTGTTCAAGACTCCATACGAAACCAACCATTAGCCCAACCATTCTTCTTTCCAACATGTACCAGAGACCTGATATGAACATCAATATCAATTTGAATGTTTCTGATCCTGATCAACCTCCTCAATCTGAACCTCCTCAGTCTCAGTCTTCTCTTGACCCTGATAAGGTGCAGGAGCATTTTGAGGATTTTTATCAAGATCTGTTTGAGGAGCTTAGTAAGTATGGTCAGATTCAGAGCTTGAATATTTGTGACAATTTGGCTGATCACATGGTTGGCAATGTATATGTTCAGTTTAAAGAGGAGGACCATGCTGCTAATGCTCTTATGAATCTCACGGGAAGGTTTTACTCAGGATATGGTTGGGGTCCTACTGTTCTTGATATCCAGGTGCCCATGGCAATAAACAAGGCTGCAATAATTGCTCTATTCCAGGCAGGACATACACATGTCGACCCATCATTGTCGACTTCTCTCCTGTTACGGATTTTCGAGAAGCTACTTGTAGACAATATGAGGAAAATGGAATTGAGAAAGCAATTATTTGGAAGAAACAAGCGTTGGAATGATCGTGGTGGAAGCAGAAGTCGGAGCCCTCCGAGGAGTCGTGCCTATGAGGAACATTCACATTCTGGCCGTGGTTCTGGTAGAAGAGATGTTGACAGGTATCATGACAGTCGTGATAGGAGGCCTAGAAGCCGTAGTCCTCGACGTAGAGAAAAACGAAGCCGGAGTCCTATGGACAGGAATGCAAGAAGGGCCAGAGAAAGTAGTGCAGAAAGGAGAGCTAAAATAGAGCAATGGAACAGGGAGAAGGAACAACAAGAATCTGGTAACAAAAACAATACGAATAGCAATGATCACGATGAACAGGGTGCTGCACAAAATGGTAGTGAATCTGGTGACCATTAG 1005 0.4368 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPTISPTILLSNMYQRPDMNININLNVSDPDQPPQSEPPQSQSSLDPDKVQEHFEDFYQDLFEELSKYGQIQSLNICDNLADHMVGNVYVQFKEEDHAANALMNLTGRFYSGYGWGPTVLDIQVPMAINKAAIIALFQAGHTHVDPSLSTSLLLRIFEKLLVDNMRKMELRKQLFGRNKRWNDRGGSRSRSPPRSRAYEEHSHSGRGSGRRDVDRYHDSRDRRPRSRSPRRREKRSRSPMDRNARRARESSAERRAKIEQWNREKEQQESGNKNNTNSNDHDEQGAAQNGSESGDH 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1199 334 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 1 327 IPR009145 GO:0000398|GO:0003723|GO:0089701
Lal11g1199 334 MobiDBLite consensus disorder prediction 217 334 - -
Lal11g1199 334 SUPERFAMILY RNA-binding domain, RBD 91 150 IPR035979 GO:0003676
Lal11g1199 334 PRINTS U2 auxiliary factor small subunit signature 18 37 IPR009145 GO:0000398|GO:0003723|GO:0089701
Lal11g1199 334 PRINTS U2 auxiliary factor small subunit signature 37 57 IPR009145 GO:0000398|GO:0003723|GO:0089701
Lal11g1199 334 PRINTS U2 auxiliary factor small subunit signature 89 104 IPR009145 GO:0000398|GO:0003723|GO:0089701
Lal11g1199 334 PRINTS U2 auxiliary factor small subunit signature 117 139 IPR009145 GO:0000398|GO:0003723|GO:0089701
Lal11g1199 334 Gene3D - 43 152 IPR012677 -
Lal11g1199 334 SMART c3hfinal6 13 39 IPR000571 GO:0046872
Lal11g1199 334 SMART rrm2_1 81 156 IPR003954 GO:0003676
Lal11g1199 334 MobiDBLite consensus disorder prediction 309 334 - -
Lal11g1199 334 ProSiteProfiles Zinc finger C3H1-type profile. 12 40 IPR000571 GO:0046872
Lal11g1199 334 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 150 IPR000504 GO:0003723
Lal11g1199 334 MobiDBLite consensus disorder prediction 272 308 - -
Lal11g1199 334 MobiDBLite consensus disorder prediction 65 85 - -
Lal11g1199 334 MobiDBLite consensus disorder prediction 217 261 - -
Lal11g1199 334 PANTHER SPLICING FACTOR U2AF SMALL SUBUNIT A 1 327 - -
Lal11g1199 334 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 81 150 IPR000504 GO:0003723
Lal11g1199 334 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 14 37 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1199 Lal-Chr11 15730559 15733804 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1199 K12836 - gmx:100783847 374.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1199 11 15730559 15733804 Lal11g1199 11 15730559 15733804 ECH