Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1189 ATGTCACTCCTCCTTCTCCCAATCCAACCCTTTTCTTTCCTCTCCTTTCCTCTCAAACCACCACTCTCTTTTCCTTCCAATTTCCACACTCATTCCCTTCATATCTCAAACACTTCAATTTCCACTACTTTTCCACACTCCAATGAACTTCCTCTATTTGATTCCCTTTTTTCCCTCCTCCGCCTTTCCACCCACCACTCCGACGCCAACCTCACCAGAACCATCCACGCCGCCGTCATCAAACACGACCAAGACACCCACCTCTCCACCGCTCTCATCACCGCATACCTCACTCATAAACTCTTCTCCGATGCCTACTCCGTTTTCCTCTCTCTCACTTTCCCTAACGTTGTTACTTACTCTGCTCTCATCTCCGCTTTCTCTAAATCGAATCTTCAATACAAAGCTTTGGAACTTTTTTTCCAAATGCGAAGTTCTGGTATTCACCCTAACCGTTACACTTTCGTAGCTGTTTTAACCGCTTGTATTAGATTACTTGATTTGAATCTTGGTCTTCAGATACATGCTATGGTTGTTAAAACTGGGGATTTGGAATGCCCTTATGTGACCAACGCGCTTATGAGTTTGTGTGGGAAATGTGGGTTTCATGATGTTGTGGTTCGCCTGTTCGATGAAATGCCGCACAGAGATATCGTGTCGTGGAACACTGTTATTAACAGTGCGGTGAATGAGTTTATGTATGGGAGTGCGTTTGAGTTGTTTCGTGAGATGCAGGCGACGGATGCTTTGAGGGTCGATGATTTCACGCTGTCCACGCTTTTGACAGCGTGTTCTGGATGTGGTGCTGTGATGGAAGGGCAGCAAGTTTATGCACATGCTATTAAGACTGGGTTGGACTCCGATTTGAGCGTTGGCAATGCGCTTATTGGGTTTTATACCAAGTGTGGAATTATTGATGATGTGGTGTGGTTGTTTGGGAGGATGAATGTGAGAGATGTTATAACTTGGACCGAGATGGTAGGTGCATATATGGAGTTTGGGTTGGTAGATTCGGCTTTGAAGCTATTTGATGAGATGCCGGAAAAAAATTCTGTGTCTTATAATGCCCTTTTATCTGGATTTTGTCAAAATGGTGAAGGTTTAAAGACTCTGGATTTGTTTATCAATATGGTGGAGGAGGGCTTAGAGTTAACCGAGTTCTCTTTGACCAGTGTTGTCAATGCATGCAGCTTAGTTGCTGATTACAATGTCAGCAAGCAAGTTCATGGATTCGTGCTCAAGTTTGGTTGTGGATCAAATGCTTATGTTGAAGCAGCGTTGCTTGACATGTATACAAAGTGTGAGAAAATGGCAGATGCCAAAAATATGTTTGTGAGGTGGGAATTAGAGGAACTTAGAGATGTAGCTTGGACATCCATGATATGTGGCTATGCTCGAAATGGGGAACTGGATGAGGCAATTTCACTGGTCCACCGTATTCAATCGGAAGGGAAAATGATTATGGACGAAGTTGCTTCAGTTTCAATGCTTAGTCTTTGTGGTACTATTGGCTGCCATGATATAGGGAAGCAAATCCATTGCAATGCTCTTAAATTCGGCTTTGAATCTAATATGGGGTTTGGAAATGCAGTTGTTAGCATGTATTTTAAGTGTGGGAATGTGGATGATGCAATTAAGATGTTTGAAGATATGCCCTTAAACGATGTAGTTTCATGGAACACTTTGATTTCTGGCCATCTTCTACACAGGCAGGGTGATAGAGCACTGGAAATCTGGTCACTTATGCAGAAGAAGGGCATAAAGCCAGACCAAGTTACATTCATTTTCATAATTTCAGCTTACAGGCTAACTAACATGAATTTGGTTGATGATTGCCGCAATTTGTTTAATTCGATGAGAACTACTTATCAAATTGAGCCGACATCTGAGCATTATTCTTCCTTCATCAGTGTTTTGGGTTACTGGGGTCTTCTGGAAGAAGCAGAGGAAACTATCAATAAAATGCCTTTTGAGCCTTCTACTCCTGTTTGGCGTGCTTTGCTGGATAGTTGCAGGCTACATAAGAATACAACCATTGAGAAACGGGTTGCTAGGAATATTCTTGCCCTGGAACCAAAAGACCCATATACATATATACTTGTTTCAAATTTGTATTCTGCTTATGGGAGATGGCACTGCTCTGAAGTGGTCAGGGAGAATATGAAAGAAAAGGGATTTCGCAAACACCCTGCTCAAAGTTGGATCATTTGTGAAAAGAAAATACATTCATTCTATCTAAGAGATAAATCACATCCACAAGAGAAAGACATATATAGTGGATTGGACATTCTGATCATGGAGTGCCTGAAAGTCGGATATGAACCTGATACAAGCTTTGTTCTCCTCGAAGTAGAGGAATTTCAGAAGAAACATTTTCTATTCTATCACAGTGCAAAATTGGCAGCAGCTTATGGAATACTAATGACCAAGCCAGGAAAGCCAATTCGGATTGTAAAGAACATCCTTCTTTGTGGAGACTGTCATGCATTCTTTAAATATTTATCTGTTGTTTCTAAGAGGGATATTTTTCTAAGAGATTCTTCAGGATTTCATTGTTTCTCTAATGGCCAGTGCTCGTGTAATGACTACCGCTAA 2595 0.4158 MSLLLLPIQPFSFLSFPLKPPLSFPSNFHTHSLHISNTSISTTFPHSNELPLFDSLFSLLRLSTHHSDANLTRTIHAAVIKHDQDTHLSTALITAYLTHKLFSDAYSVFLSLTFPNVVTYSALISAFSKSNLQYKALELFFQMRSSGIHPNRYTFVAVLTACIRLLDLNLGLQIHAMVVKTGDLECPYVTNALMSLCGKCGFHDVVVRLFDEMPHRDIVSWNTVINSAVNEFMYGSAFELFREMQATDALRVDDFTLSTLLTACSGCGAVMEGQQVYAHAIKTGLDSDLSVGNALIGFYTKCGIIDDVVWLFGRMNVRDVITWTEMVGAYMEFGLVDSALKLFDEMPEKNSVSYNALLSGFCQNGEGLKTLDLFINMVEEGLELTEFSLTSVVNACSLVADYNVSKQVHGFVLKFGCGSNAYVEAALLDMYTKCEKMADAKNMFVRWELEELRDVAWTSMICGYARNGELDEAISLVHRIQSEGKMIMDEVASVSMLSLCGTIGCHDIGKQIHCNALKFGFESNMGFGNAVVSMYFKCGNVDDAIKMFEDMPLNDVVSWNTLISGHLLHRQGDRALEIWSLMQKKGIKPDQVTFIFIISAYRLTNMNLVDDCRNLFNSMRTTYQIEPTSEHYSSFISVLGYWGLLEEAEETINKMPFEPSTPVWRALLDSCRLHKNTTIEKRVARNILALEPKDPYTYILVSNLYSAYGRWHCSEVVRENMKEKGFRKHPAQSWIICEKKIHSFYLRDKSHPQEKDIYSGLDILIMECLKVGYEPDTSFVLLEVEEFQKKHFLFYHSAKLAAAYGILMTKPGKPIRIVKNILLCGDCHAFFKYLSVVSKRDIFLRDSSGFHCFSNGQCSCNDYR 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1189 864 Gene3D Tetratricopeptide repeat domain 268 406 IPR011990 GO:0005515
Lal11g1189 864 Gene3D Tetratricopeptide repeat domain 605 749 IPR011990 GO:0005515
Lal11g1189 864 TIGRFAM PPR: pentatricopeptide repeat domain 219 246 IPR002885 -
Lal11g1189 864 TIGRFAM PPR: pentatricopeptide repeat domain 321 350 IPR002885 -
Lal11g1189 864 TIGRFAM PPR: pentatricopeptide repeat domain 190 219 IPR002885 -
Lal11g1189 864 TIGRFAM PPR: pentatricopeptide repeat domain 455 484 IPR002885 -
Lal11g1189 864 TIGRFAM PPR: pentatricopeptide repeat domain 557 590 IPR002885 -
Lal11g1189 864 TIGRFAM PPR: pentatricopeptide repeat domain 118 151 IPR002885 -
Lal11g1189 864 TIGRFAM PPR: pentatricopeptide repeat domain 352 385 IPR002885 -
Lal11g1189 864 TIGRFAM PPR: pentatricopeptide repeat domain 529 556 IPR002885 -
Lal11g1189 864 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 116 150 IPR002885 -
Lal11g1189 864 Pfam DYW family of nucleic acid deaminases 772 863 IPR032867 GO:0008270
Lal11g1189 864 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 384 472 - -
Lal11g1189 864 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 466 850 - -
Lal11g1189 864 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 43 391 - -
Lal11g1189 864 Pfam E motif 676 735 IPR046848 -
Lal11g1189 864 PANTHER OS07G0172600 PROTEIN 466 850 - -
Lal11g1189 864 PANTHER OS07G0172600 PROTEIN 43 391 - -
Lal11g1189 864 PANTHER OS07G0172600 PROTEIN 384 472 - -
Lal11g1189 864 Pfam PPR repeat family 349 396 IPR002885 -
Lal11g1189 864 Pfam PPR repeat family 115 163 IPR002885 -
Lal11g1189 864 Pfam PPR repeat family 217 264 IPR002885 -
Lal11g1189 864 Pfam PPR repeat family 555 601 IPR002885 -
Lal11g1189 864 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 319 349 IPR002885 -
Lal11g1189 864 Pfam PPR repeat 529 553 IPR002885 -
Lal11g1189 864 Pfam PPR repeat 455 484 IPR002885 -
Lal11g1189 864 Pfam PPR repeat 293 318 IPR002885 -
Lal11g1189 864 Pfam PPR repeat 631 655 IPR002885 -
Lal11g1189 864 Gene3D Tetratricopeptide repeat domain 167 267 IPR011990 GO:0005515
Lal11g1189 864 Gene3D Tetratricopeptide repeat domain 34 166 IPR011990 GO:0005515
Lal11g1189 864 Gene3D Tetratricopeptide repeat domain 407 505 IPR011990 GO:0005515
Lal11g1189 864 Gene3D Tetratricopeptide repeat domain 506 604 IPR011990 GO:0005515
Lal11g1189 864 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 453 487 IPR002885 -
Lal11g1189 864 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 350 384 IPR002885 -
Lal11g1189 864 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 555 589 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1189 Lal-Chr11 15656065 15658659 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1189 58 863 Glycoside Hydrolase AT3G49170 33.171 7.48e-145 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1189 - - lang:109337571 1643.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1189 11 15656065 15658659 Lal11g1189 11 15656065 15658659 ECH