Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1165 ATGGTTTTCTTTGATCAATCAGATGTTATTCAGTGGGGTCTTAATATTCTCAATGGTGACCCTAGTTATAGTACTGAATACTATAACAACATAGATCAAGATGATAATAGTGACATCTATAATGGACCCTATTTCCAGAACCATCATGAAAATGATTCTAACCATGTAGAGAATGATGAGATTATTGCTCGTACTCTTCAAGAAGAGTTTTCACAGCTTGAGATTGAGGAATGTTCGAGGAATGTACAGGAAGGTGCAGGACAGTTCCATACTCCCCAGACTAAGCCTGCATATGATTTGCATAACTCTGCAATAGGGAATTATTGTTCAGGAGGTCATAAATATGAACAAAAAGGAATTGATGACGTAGAACCTTCTAGTCCTGGTGAAACAGGGGAATCCTCATCAGAGCTAACTGATAATTCTACACATGATGATGAAGCAGGGAGGAGATTCAGTGACATGACACCAATCCCTCATGTTCCGAAAATTAATGGAGAGATTCCTTCAATTGATGAAGCAACGTCAGATCATCAAAGACTTTTCGATAGATTGCAGTTATATGACTTTGTGGTGCACAAGGTACAAGGTGATGGTAATTGTCAGTTCCGTGCACTCTCCGATCAATTGTATAATGCACCTGATCGCCACAAGTTTGTGAGACGACAAGTTGTGAATCAGCTCAAATCTAATCCCGAGATTTATGATGGATATGTTCCCATGGAATACGGTGACTACTTGGCGAAGATGTCTAAGGGTGGAGAATGGGGTGATCATGTCACTCTTCAAGCAGCTGCTGATAAGTATGGTGTGAAGATATTTGTGATGACTTCTTTCAAGGACACATGTTGCATAGAGATTCTTCCAAATTTTGAGAAGCCGAAAAGAGTGATTTTCCTAAGTTTTTGGGCAGAGGTGCATTACAATTCTATCCACCCTAGAGGAGATAAAGCTTCAAGTGAGTCAAGAAAGAAAGAATGGTGGTCTAGGAGCTTTGGAATTTCAATGCTTCATGAACAAGCTACTCCCGCAGTCACATCTTGCTCTTCTAGTTTTGCAGCCAGGAATTTTCCCACCTCGGTTCTTTTACAAGAGCAGCACGATGAGTATAGGCCTCTACTGCATATGTATAAGGAAGATAAGACATCCCAGGCCACATTAAATACAAGGCAGATGAATATGGCTTCAGTTCATGAAAAGAATAACATTGGTGATGCATATCCATTTGTGGACAACTTTATGCAGCAGTTGCATCTCCGGTCTCATTTACAGAACATATTGACTTCCTCACCGAGAGAGGAAATCACCGCTTCTTCAATTCCACAGCCTGTTACTATTGATTCAGACCGGCCTGCATATGGTCTGAAATCTAATGCAGTTTCTCTTGCCAAGCAAGCTTTGTTAGCCTCAAAACAAGCAGCTTCGGTAGCTAAAGAGTTGAAATCAGTTATAGCTGATGATGCTGATCCACTTCCTTTTAGTATGGCATCCACAAGCTTGGCCAACTGTTCACTTGGAAAGAATAAAGTTGTGAGGTCAACACGGCTTCTGGAAAGAAAATCCAAACAAAGGAAGGTACCAAAGTCAAAAGTTCTTGACAAAGAAAGTTACCTTGCAAGAAAGTCAGATGCACAGGGAAGGTTACGTGTAGAAAAGACGACAAAGGAGGGGTTTGGTCAAAATGATCCCTTGCGCTTGTTCTTGTGGGGTCCTGAAACAAAGCAACTTTTGACTGTTGAGGAAGAGTCCCAATTGATTTCTCAGCTACAGGATTTATCAAGATTGGAAGAAGTAAAGATGAAACTTCAATCTCAGTTCGGGAGGCAACCAACTCTGGCTGAATGGGCTGAGAGTGTTGGCCTTAGCTGTCAAGCATTGCAGACACGGCTTGATTGTGGTTACAGAAGTAGAGAAAAGCTGATTACGGCCAACTTACGCATGGTAGTTCATATTGCTAAAAATTATCTGGGGCGTGGTCTCAGCCTTCAAGACTTATTGCAGGAAGGAAGTATGGGTCTTATGAAGAGTGTGGAGAGGTTTAAACCCCAAGCTGGTTGCCGGTTTGGTACTTATGCATACTGGTGGGTAAGACAAACAATAAGGAAGGCCATATTTCTACATTCCAGGACAATCCGTCTGCCGGAGAATTTATATACCCTTTTGGGCAAGGTCATTGAAGCAAAGAAATTGTACATTCATGAAGGCAATCTTCGCCCAACCAAAGAAGAATTAGCAGAAAGGGTAGGAATTACAGTAAACAAGTTGGAAAATTTGCTGTTTGCTGCAAGAATTCCACTTTCAATGCAGCAAACTGTGTGGGCAGGCCAAGATACAACTTTCCAGGAGATTACTGCAGACTCTGCGTTCGAGATCCCAGATGTTAGTGTTTCAAAACTGCTTATGAGGAGGCATGTGTGCAACATCCTAAACATCTTAAGCCCAAAAGAAAGGAGGATAATAAGGCTAAGATTTGGCATTGAAGATGGTCATGAGAAATCATTGTCCGACATCGGAAAGGTATTTGGTTTGACTAAGGAGAGGGTCCGACAGTTGGAGAGCCGAGCATTGGACAAACTCAAGCAGTGCCTTGTCACTGAGGGACTTGATGCATATATAGACTTGATTGTATAA 2631 0.4166 MVFFDQSDVIQWGLNILNGDPSYSTEYYNNIDQDDNSDIYNGPYFQNHHENDSNHVENDEIIARTLQEEFSQLEIEECSRNVQEGAGQFHTPQTKPAYDLHNSAIGNYCSGGHKYEQKGIDDVEPSSPGETGESSSELTDNSTHDDEAGRRFSDMTPIPHVPKINGEIPSIDEATSDHQRLFDRLQLYDFVVHKVQGDGNCQFRALSDQLYNAPDRHKFVRRQVVNQLKSNPEIYDGYVPMEYGDYLAKMSKGGEWGDHVTLQAAADKYGVKIFVMTSFKDTCCIEILPNFEKPKRVIFLSFWAEVHYNSIHPRGDKASSESRKKEWWSRSFGISMLHEQATPAVTSCSSSFAARNFPTSVLLQEQHDEYRPLLHMYKEDKTSQATLNTRQMNMASVHEKNNIGDAYPFVDNFMQQLHLRSHLQNILTSSPREEITASSIPQPVTIDSDRPAYGLKSNAVSLAKQALLASKQAASVAKELKSVIADDADPLPFSMASTSLANCSLGKNKVVRSTRLLERKSKQRKVPKSKVLDKESYLARKSDAQGRLRVEKTTKEGFGQNDPLRLFLWGPETKQLLTVEEESQLISQLQDLSRLEEVKMKLQSQFGRQPTLAEWAESVGLSCQALQTRLDCGYRSREKLITANLRMVVHIAKNYLGRGLSLQDLLQEGSMGLMKSVERFKPQAGCRFGTYAYWWVRQTIRKAIFLHSRTIRLPENLYTLLGKVIEAKKLYIHEGNLRPTKEELAERVGITVNKLENLLFAARIPLSMQQTVWAGQDTTFQEITADSAFEIPDVSVSKLLMRRHVCNILNILSPKERRIIRLRFGIEDGHEKSLSDIGKVFGLTKERVRQLESRALDKLKQCLVTEGLDAYIDLIV 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1165 876 CDD Sigma70_r4 802 860 - -
Lal11g1165 876 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 636 863 IPR014284 GO:0003700|GO:0006352|GO:0006355
Lal11g1165 876 Pfam Sigma-70 region 3 721 789 IPR007624 GO:0003700|GO:0006352|GO:0006355
Lal11g1165 876 Pfam OTU-like cysteine protease 196 282 IPR003323 -
Lal11g1165 876 Coils Coil 56 76 - -
Lal11g1165 876 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 713 786 IPR013324 -
Lal11g1165 876 Gene3D - 791 863 IPR036388 -
Lal11g1165 876 Gene3D - 713 789 IPR036388 -
Lal11g1165 876 SUPERFAMILY Cysteine proteinases 177 315 IPR038765 -
Lal11g1165 876 Gene3D - 173 320 - -
Lal11g1165 876 ProSitePatterns Sigma-70 factors family signature 1. 664 677 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lal11g1165 876 ProSitePatterns Sigma-70 factors family signature 2. 833 859 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lal11g1165 876 MobiDBLite consensus disorder prediction 139 153 - -
Lal11g1165 876 Gene3D - 504 709 - -
Lal11g1165 876 ProSiteProfiles OTU domain profile. 190 314 IPR003323 -
Lal11g1165 876 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 774 872 IPR013324 -
Lal11g1165 876 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 560 710 IPR013325 GO:0003700|GO:0006352|GO:0006355
Lal11g1165 876 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 326 876 - -
Lal11g1165 876 PRINTS Major sigma-70 factor signature 664 677 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lal11g1165 876 PRINTS Major sigma-70 factor signature 688 696 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lal11g1165 876 PRINTS Major sigma-70 factor signature 812 824 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lal11g1165 876 PRINTS Major sigma-70 factor signature 833 848 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lal11g1165 876 PRINTS Major sigma-70 factor signature 848 859 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lal11g1165 876 Pfam Sigma-70 region 2 640 704 IPR007627 GO:0003700|GO:0006352|GO:0006355
Lal11g1165 876 MobiDBLite consensus disorder prediction 116 166 - -
Lal11g1165 876 Pfam Sigma-70, region 4 809 861 IPR007630 GO:0003700|GO:0006352|GO:0006355
Lal11g1165 876 PANTHER RNA POLYMERASE SIGMA-70 LIKE DOMAIN, RNA POLYMERASE SIGMA-B/F/G TYPE-RELATED 326 876 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1165 Lal-Chr11 15374636 15386318 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1165 - - mcha:111013756 873.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1165 11 15374636 15386318 Lal11g1165 11 15374636 15386318 ECH