Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1094 ATGGATGATTCAACGGAGGGAGAGTTATACGACGGCGTTCGATCTCAATTCCCTCTTTCCTTTGGTAAACAATCAAAATCCCAAACCCCACTCGAAGCAATTCACAACGCCACTCGTCGTTCCATTTCTCTCTCTTCCATTAACCCTACCCCACCGCCTCCACCGCCACCTGGATCTAATGATTATGATGATGATGATGATGACGACGACGACGGTGAGATGATTGGCCCGCCACCACCGCCTCCTGCCGCCAATTTGACATCCGACGATGAAGAAGATTCGGATGAGGACGAGGTTGGGAAACGGTTTCGGATTCCAATTACTAATGAGATTGTCCTCAAGGGCCACACCAAGGTTGTGTCAGCTCTTGCTGTGGATCACACTGGTTCCAGAGTACTTTCTGGAAGTTACGACTATACAGTACGTATGTATGATTTTCAAGGAATGAATTCTCGATTGCAATCATTTCGAACACTGGAGCCATCTGAAGGTCATCAAGTTCGCCATCTAAGCTGGAGTCCCTCTGCAGATCGCTTTTTGTGTGTGACCGGATCAGCTCAAGCAAAGATTTATGATCGTGACGGGCTTACTCTGGGAGAGTTTATGAAGGGAGATATGTATATTCGTGATCTGAAGAATACCAAGGGCCACATAACTGGATTGACATGTGGAGAGTGGCATCCAAAAAACAAAGAAACAATTTTAACATCATCAGAGGATGGGTCACTGCGCATATGGGATGTAAATGACTTCAAAAGTCAGAAACAGGTCATTAAACCAAAGCTTGCAAGACCTGGAAGAGTTCCTGTCACCACGTGTGCATGGGATCGGGATGGTAAATGCATTGCTGGTGGTATAGGAGATGGTTCTATACAGGTTTGGAATATTAAGCCTGGATGGGGGAGTAGACCAGATGTGCATATTGAAAAAAGCCATTCGGATGATATTACTGCTCTGAAATTTTCTAGTGATGGGAGGATTTTATTATCAAGAAGCTTCGATGGTTCGTTAAAGGTTTGGGATTTGCGCAAAGCAAAGGAAGCTTTGAAGGTATTTGAGGATCTTCCAAATAACTATGGTCAAACAAATATTACCTTCAGTCCTGATGAACAACTCTTTTTGACTGGAACATCTGTTGAAAGGGAGAGCTCGACTGGAGGTTTACTGTGCTTCTTTGATAGAGTAAACCTTGAGCTTGTTTCAAGAGTTGGCATATCCCCCACATGTAGTGTTATTCAGTGCTCTTGGCACCCTAAACTAAATCAGATCTTTGCAACTGTTGGTGATAAAAGCCAAGGAGGGACTCATGTACTATATGATCCAACCCTCAGTGAAAGAGGAGCTCTTGTCTGTGTTGCTCGCGCACCCAGGAAAAAATCAATTGATGATTTTGAGGCAAAACCGGTTATTCACAATCCTCACTCCTTACCACTATTTAGAGATCAGCCAAGCCGGAAGCGCCAGCGAGAGAAGATACTAAAGGATCCAATGAAATCCCATAAGCCTGAGCTTCCCATGACAGGACCTGGCTTTGGTGGACGAGTTGGCACTACTCAAGGAAGCTTACTGACCCAGTATCTCATGAAGCAAGGGGGTATGATTAAGGAGACATGGATGGAGGAAGATCCAAGGGAAGCTATCCTGAAATATGCTGATGTTGCAGCGAAGGAGCCGAAGTTCATTGCTCCGGCATATGCAGAAACCCAACCTGAGCCAGTTTTTGCAAAATCGGATTCCGAGGATGAAGAGAAATGA 1755 0.4496 MDDSTEGELYDGVRSQFPLSFGKQSKSQTPLEAIHNATRRSISLSSINPTPPPPPPPGSNDYDDDDDDDDDGEMIGPPPPPPAANLTSDDEEDSDEDEVGKRFRIPITNEIVLKGHTKVVSALAVDHTGSRVLSGSYDYTVRMYDFQGMNSRLQSFRTLEPSEGHQVRHLSWSPSADRFLCVTGSAQAKIYDRDGLTLGEFMKGDMYIRDLKNTKGHITGLTCGEWHPKNKETILTSSEDGSLRIWDVNDFKSQKQVIKPKLARPGRVPVTTCAWDRDGKCIAGGIGDGSIQVWNIKPGWGSRPDVHIEKSHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKAKEALKVFEDLPNNYGQTNITFSPDEQLFLTGTSVERESSTGGLLCFFDRVNLELVSRVGISPTCSVIQCSWHPKLNQIFATVGDKSQGGTHVLYDPTLSERGALVCVARAPRKKSIDDFEAKPVIHNPHSLPLFRDQPSRKRQREKILKDPMKSHKPELPMTGPGFGGRVGTTQGSLLTQYLMKQGGMIKETWMEEDPREAILKYADVAAKEPKFIAPAYAETQPEPVFAKSDSEDEEK 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1094 584 Pfam WD domain, G-beta repeat 269 295 IPR001680 GO:0005515
Lal11g1094 584 Pfam WD domain, G-beta repeat 308 341 IPR001680 GO:0005515
Lal11g1094 584 Pfam WD domain, G-beta repeat 212 247 IPR001680 GO:0005515
Lal11g1094 584 Pfam WD domain, G-beta repeat 111 145 IPR001680 GO:0005515
Lal11g1094 584 MobiDBLite consensus disorder prediction 1 99 - -
Lal11g1094 584 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 309 343 - -
Lal11g1094 584 SUPERFAMILY WD40 repeat-like 92 429 IPR036322 GO:0005515
Lal11g1094 584 SMART WD40_4 204 247 IPR001680 GO:0005515
Lal11g1094 584 SMART WD40_4 302 341 IPR001680 GO:0005515
Lal11g1094 584 SMART WD40_4 106 145 IPR001680 GO:0005515
Lal11g1094 584 SMART WD40_4 251 295 IPR001680 GO:0005515
Lal11g1094 584 SMART WD40_4 152 192 IPR001680 GO:0005515
Lal11g1094 584 ProSitePatterns Trp-Asp (WD) repeats signature. 234 248 IPR019775 -
Lal11g1094 584 Gene3D - 107 202 IPR015943 GO:0005515
Lal11g1094 584 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 113 147 - -
Lal11g1094 584 ProSiteProfiles Trp-Asp (WD) repeats profile. 309 350 IPR001680 GO:0005515
Lal11g1094 584 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 214 249 - -
Lal11g1094 584 ProSiteProfiles Trp-Asp (WD) repeats profile. 113 154 IPR001680 GO:0005515
Lal11g1094 584 MobiDBLite consensus disorder prediction 562 584 - -
Lal11g1094 584 MobiDBLite consensus disorder prediction 60 74 - -
Lal11g1094 584 CDD WD40 112 431 - -
Lal11g1094 584 PRINTS G protein beta WD-40 repeat signature 234 248 IPR020472 -
Lal11g1094 584 PRINTS G protein beta WD-40 repeat signature 282 296 IPR020472 -
Lal11g1094 584 PRINTS G protein beta WD-40 repeat signature 328 342 IPR020472 -
Lal11g1094 584 PANTHER GASTRULATION DEFECTIVE PROTEIN 1-RELATED 7 584 - -
Lal11g1094 584 ProSitePatterns Trp-Asp (WD) repeats signature. 282 296 IPR019775 -
Lal11g1094 584 MobiDBLite consensus disorder prediction 18 46 - -
Lal11g1094 584 Gene3D - 203 442 IPR015943 GO:0005515
Lal11g1094 584 ProSiteProfiles Trp-Asp (WD) repeats profile. 214 256 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1094 Lal-Chr11 14628263 14632070 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1094 234 408 Miscellaneous Gene Families AT5G08390 23.864 2.63e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1094 K24752 - gmx:100815380 961.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1094 11 14628263 14632070 Lal11g1094 11 14628263 14632070 ECH