Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1038 ATGGGTATTGGTAATCAGGAAGCAATCAAGCAGTTGCACTCCTTGATTGAAAATGTGGATGAGAAACTGAAGAAATCATTCCAGAATATGCACCAGGGCTATCCAACTGAAACATTGTTAAGGTTTCTTAAAGCAAGGGACTGGAATGTTGGCAAAGCCCATAAAATGTTACTCGATTCTTTACAATGGAGAGTGGAAAATGAGATTGACAATGTTTTAGAGAAGCCAATCCCAGCAGATTTGTACAGAGCTGTGCGAGATTCTCAACTCATAGGAATGTCTGGTTACTCAAAGGAGGGTCTACCCGTCGTTGCTGTTGGTGTTGGGCTTAGCACATTTGACAAAGCTTCTCCAACAGCGACAAAGAAGCATGGACGATACGTAGGCACCTGTCTCAAGGTCTTGGATATGAACGGTTTAAAACTATCAGCTCTGAGTCACTTGAGGCTTTTGACTTCTATATCTACAATAGATGATTTGAACTACCCGGAAATGACAGATACATACTATATTGTTAATGCGCCATATGTATTCTCAGCATGTTGGAAGATTGTAAAACCTCTTTTGCAAGAAAGAACAAGGAAGAAAATCCAGGTTCTGCAAGGTTGTGGGAAGGAGGAATTACTGAAGGTAATGGACTATGCATCCCTCCCACACTTTTGCAGAAAAGAAGATTCAAAGTCATCCCGACTTAATGTATCGAGAAAGGCCGAAAATATTTTCTCATTCGATCATGTCTTCCATCAACAACTCTATAACTACATCAAGCAGCAAAAGCTATCTTTATGGAAACAAGATAACCAATCAGACAAGGGTCCTTCTATGTAG 828 0.4034 MGIGNQEAIKQLHSLIENVDEKLKKSFQNMHQGYPTETLLRFLKARDWNVGKAHKMLLDSLQWRVENEIDNVLEKPIPADLYRAVRDSQLIGMSGYSKEGLPVVAVGVGLSTFDKASPTATKKHGRYVGTCLKVLDMNGLKLSALSHLRLLTSISTIDDLNYPEMTDTYYIVNAPYVFSACWKIVKPLLQERTRKKIQVLQGCGKEELLKVMDYASLPHFCRKEDSKSSRLNVSRKAENIFSFDHVFHQQLYNYIKQQKLSLWKQDNQSDKGPSM 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1038 275 Coils Coil 5 25 - -
Lal11g1038 275 CDD SEC14 82 220 IPR001251 -
Lal11g1038 275 SMART sec14_4 78 226 IPR001251 -
Lal11g1038 275 Gene3D - 4 66 - -
Lal11g1038 275 PRINTS Cellular retinaldehyde-binding protein signature 38 60 - -
Lal11g1038 275 PRINTS Cellular retinaldehyde-binding protein signature 182 201 - -
Lal11g1038 275 SUPERFAMILY CRAL/TRIO N-terminal domain 15 75 IPR036273 -
Lal11g1038 275 SMART CRAL_TRIO_N_2 35 60 IPR011074 -
Lal11g1038 275 Pfam CRAL/TRIO, N-terminal domain 8 59 IPR011074 -
Lal11g1038 275 SUPERFAMILY CRAL/TRIO domain 80 220 IPR036865 -
Lal11g1038 275 Pfam CRAL/TRIO domain 125 220 IPR001251 -
Lal11g1038 275 PANTHER OS09G0258000 PROTEIN 1 261 - -
Lal11g1038 275 PANTHER - 1 261 - -
Lal11g1038 275 Gene3D - 71 243 IPR036865 -
Lal11g1038 275 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 119 229 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1038 Lal-Chr11 13992310 13996938 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1038 29 260 Acyl Lipid Metabolism Gene Families AT1G55840 65.613 8.45e-125 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1038 - - cam:101507505 425.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1038 11 13992310 13996938 Lal11g1038 11 13992310 13996938 ECH