Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0884 ATGGACGAAAAAATCCCTTTTAAAAATCTCCATAGTCGAGAGTATTCCGGTCACAAGAAAAAGGTTCACTCTGTGGCTTGGAATTGTATTGGCACAAAACTTGCTTCTGGATCTGTGGATCAAACTGCGAGAATCTGGTATATTGAACCACATGGACATGGTAAGGTCAAAGATATTGAATTGAAGGGTCACACTGATAGTGTGGATCAGCTATGCTGGGACCCCAAACATGCTGATTTGATTGCAACTGCATCGGGTGACAAGACTGTCCGTTTGTGGGATGCTCGTAGTGGAAAATGCTCACAACAAGCAGAACTTAGTGGGGAGAATATCAACATCACCTATAAACCTGATGGAACTCATGTAGCTGTAGGTAATAGGGATGATGAATTAACAATACTGGATGTTCGGAAGTTCAAACCAATTCACAAGCGCAAGTTTAATTATGAGGTGAATGAGATTGCTTGGAACGTGACCGGCGAGATGTTCTTTCTAACTACAGGAAATGGGACTGTGGAAGTGCTGTCTTACCCATCTCTTCGACCTCTTGATACCCTCACTGCTCATACGGCTGGTTGTTATTGCATCGCAATTGACCCAGTAGGAAGATATTTTGCTGTTGGAAGTGCTGATTCCCTTGTCAGCCTGTGGAATATATCGGAGATGCTCTGTGTGCGTACCTTTACAAAGCTCGAATGGCCCGTCCGGACAATTAGCTTTAATCATACTGGGGATTTTATTGCTTCTGCAAGCGAAGACTTGTTCATCGATATTTCAAATGTTCACACTGGACGAACAGTGCATCAGATTCCATGTAGGGCTGCTATGAACAGTGTCGAGTGGAATCCGAAATACAATTTACTTGCATATGCTGGTGATGACAAAAACAAGTATCAGGCTGATGAAGGCGTTTTCCGAATTTTCGGCTTTGAAAATGCCTAG 942 0.431 MDEKIPFKNLHSREYSGHKKKVHSVAWNCIGTKLASGSVDQTARIWYIEPHGHGKVKDIELKGHTDSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHVAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNVTGEMFFLTTGNGTVEVLSYPSLRPLDTLTAHTAGCYCIAIDPVGRYFAVGSADSLVSLWNISEMLCVRTFTKLEWPVRTISFNHTGDFIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIFGFENA 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0884 313 Pfam Anaphase-promoting complex subunit 4 WD40 domain 232 282 IPR024977 -
Lal11g0884 313 Gene3D - 166 299 IPR015943 GO:0005515
Lal11g0884 313 ProSiteProfiles Trp-Asp (WD) repeats profile. 186 227 IPR001680 GO:0005515
Lal11g0884 313 SUPERFAMILY WD40 repeat-like 9 295 IPR036322 GO:0005515
Lal11g0884 313 ProSitePatterns Trp-Asp (WD) repeats signature. 81 95 IPR019775 -
Lal11g0884 313 ProSiteProfiles Trp-Asp (WD) repeats profile. 61 103 IPR001680 GO:0005515
Lal11g0884 313 PRINTS G protein beta WD-40 repeat signature 34 48 IPR020472 -
Lal11g0884 313 PRINTS G protein beta WD-40 repeat signature 81 95 IPR020472 -
Lal11g0884 313 PRINTS G protein beta WD-40 repeat signature 205 219 IPR020472 -
Lal11g0884 313 SMART WD40_4 138 176 IPR001680 GO:0005515
Lal11g0884 313 SMART WD40_4 179 218 IPR001680 GO:0005515
Lal11g0884 313 SMART WD40_4 221 260 IPR001680 GO:0005515
Lal11g0884 313 SMART WD40_4 8 47 IPR001680 GO:0005515
Lal11g0884 313 SMART WD40_4 54 94 IPR001680 GO:0005515
Lal11g0884 313 SMART WD40_4 263 301 IPR001680 GO:0005515
Lal11g0884 313 CDD WD40 11 295 - -
Lal11g0884 313 Gene3D - 5 165 IPR015943 GO:0005515
Lal11g0884 313 Pfam WD domain, G-beta repeat 60 94 IPR001680 GO:0005515
Lal11g0884 313 Pfam WD domain, G-beta repeat 12 46 IPR001680 GO:0005515
Lal11g0884 313 Pfam WD domain, G-beta repeat 181 218 IPR001680 GO:0005515
Lal11g0884 313 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 15 46 - -
Lal11g0884 313 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 61 99 - -
Lal11g0884 313 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 186 220 - -
Lal11g0884 313 PANTHER THO COMPLEX SUBUNIT 3 THO3 4 312 IPR040132 GO:0006406
Lal11g0884 313 ProSiteProfiles Trp-Asp (WD) repeats profile. 15 46 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g0884 Lal-Chr11 11554243 11559530 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g0884 151 309 Miscellaneous Gene Families AT5G08390 23.125 9.18e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0884 K12880 - gmx:100812126 635.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g0884 11 11554243 11559530 Lal11g0884 11 11554243 11559530 ECH