Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0706 ATGGTTACAGATGAAGAAATATCGGAAGCATTGAAATCGGTGTTGAGAGAATCAAACCCTAGAACCTTCACTAACTTGAACCAACTCGTTCAAGTTCTTCAATCCAAACTCGGTGGTCATGATCTCACTCACAAGTTCGATTTCATTACCCAACAGATCCACTTCCTCTTCGGATCTCAACAACCGCAACAACGTCCACCACCACCGCCGCCGCCGCAACAACTTCCTCAGAGGCAGTTCCTACACCCTCATCAACCTCAACAACAGCAACCACCTCATAAGGACCATTTTGCCCTTCACCAAAACCCTAATTTTCAAAGTTCAACTACCGTTGTGCCTGCATCTTCTGGCTTCCTGAACTTCTCTTCCGGCTCTGTGTCGCCGGTTAAACACGAGGCTGCCGCTGTTGCGGTCGCTGATGCATCTGGTGCTCGCAGTGAAGCTCCTCCTGTTCCGGCAAGCAGCGAGGTTCCTAAGGAAGGTACTCAACCTAAGGCAAAGAGAAGAGGTGGCCCAGGTGGTCTCAACAAACTCTGTGGTGTTTCGCCTGAACTTCAGGTCATTGTTGGCCAGCCAGCATTGCCGAGGACTGAGATTGTGAAGCAACTGTGGGCTTACATAAGGAAAAATAATCTCCAAGATCCTAGCAACAAAAGGAAAATAATTTGCAATGATGAGCTGCGTGTGGTATTCGAGACGGATTGCACAGATATGTTCAAGATGAATAAGTTGCTAGCTAAACACATAATCACCCTTGAACCAACCAAACAGCCAGTTCCTAAGAAGCAGAAGGTAGAGGTGGAGTCTGGAACAATAAGTGGTCAACCTGCTCCTTCGGTAATAATATCTGATGCACTTGCTAACTTTTTTGGCATTGCTGGAAGGGAGATGCTACAGTCAGAGGTTCTAAGGCGTATCTGGGAGTACATAAAGGTCAACCAGCTAGAGGATCCTGTGAATCCTATGACAATAGTATGTGACACAAAGCTTCAGGAGCTCTTTGGCTGTGAGAGCATTTCAGCATTAGGTATACCTGAAGTTCTGGGACGTCATCATATTGTTAGGAGATCATGA 1074 0.4665 MVTDEEISEALKSVLRESNPRTFTNLNQLVQVLQSKLGGHDLTHKFDFITQQIHFLFGSQQPQQRPPPPPPPQQLPQRQFLHPHQPQQQQPPHKDHFALHQNPNFQSSTTVVPASSGFLNFSSGSVSPVKHEAAAVAVADASGARSEAPPVPASSEVPKEGTQPKAKRRGGPGGLNKLCGVSPELQVIVGQPALPRTEIVKQLWAYIRKNNLQDPSNKRKIICNDELRVVFETDCTDMFKMNKLLAKHIITLEPTKQPVPKKQKVEVESGTISGQPAPSVIISDALANFFGIAGREMLQSEVLRRIWEYIKVNQLEDPVNPMTIVCDTKLQELFGCESISALGIPEVLGRHHIVRRS 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0706 357 Pfam SWIB/MDM2 domain 179 249 IPR003121 -
Lal11g0706 357 Pfam SWIB/MDM2 domain 281 351 IPR003121 -
Lal11g0706 357 SMART swib_2 175 254 IPR019835 -
Lal11g0706 357 SMART swib_2 275 357 IPR019835 -
Lal11g0706 357 MobiDBLite consensus disorder prediction 62 77 - -
Lal11g0706 357 ProSiteProfiles SWIB/MDM2 domain profile. 275 354 IPR003121 -
Lal11g0706 357 Gene3D SWIB/MDM2 domain 270 357 IPR036885 -
Lal11g0706 357 Gene3D SWIB/MDM2 domain 170 258 IPR036885 -
Lal11g0706 357 PANTHER - 1 354 - -
Lal11g0706 357 MobiDBLite consensus disorder prediction 78 101 - -
Lal11g0706 357 SUPERFAMILY beta-sandwich domain of Sec23/24 54 109 - -
Lal11g0706 357 Pfam DEK C terminal domain 2 54 IPR014876 -
Lal11g0706 357 ProSiteProfiles SWIB/MDM2 domain profile. 174 251 IPR003121 -
Lal11g0706 357 SUPERFAMILY SWIB/MDM2 domain 277 352 IPR036885 -
Lal11g0706 357 CDD SWIB-MDM2_like 179 249 - -
Lal11g0706 357 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 1 354 - -
Lal11g0706 357 SUPERFAMILY SWIB/MDM2 domain 168 255 IPR036885 -
Lal11g0706 357 CDD SWIB-MDM2_like 280 351 - -
Lal11g0706 357 MobiDBLite consensus disorder prediction 140 175 - -
Lal11g0706 357 MobiDBLite consensus disorder prediction 59 101 - -
Lal11g0706 357 Gene3D - 1 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g0706 Lal-Chr11 6866766 6871068 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Lal11g0706 SWIB 1.4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0706 K15223 - gmx:100801960 447.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g0706 11 6866766 6871068 Lal11g0706 11 6866766 6871068 ECH