Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1151 ATGAGTGGAGCATTAACAGGGTTACAAGATCATCTCAAATTAGCCAGAGAATATGCTCTCGAAGGACTCTACGACACTTCAATCATCTTCTTCGATGGCGCAATTGCACAGATCAACAAGCACCTAAACAGTGTTGATGATCCTTTAATCCGTTCCAAATGGATGAACGTGAAAAAAGCGCTTTCTGAAGAAACTGAAGTTGTGAAGCAACTAGATGCAGAGATAAGGGCATTTAAGGAAATTCCAACGGCAAATTCAAGACGTCCTCCTTCACCACCAATATCAGTTTCTTCTGCCAAATCTAACTTTACATTTCAGCCGTTGGATGAGTACCCTACTTCGTCGTCATCGGGTGGTGGCGGTGGTAGTGGTGGTTTTAATAATCCAATGGACGATCCTGATGTGTGGAGGCCGCCGAGTAGAGATACTTCTAGAAGACCACAGGCTACAAGGAATGTGAAGAAAGATGGCGCGTGGGCGCGTGGTGCTACTACCAGAACATCAACAACGGTTGCTGCTGCAACAAATGCTCGTGCTGGTGCTGGTGGGAGGGTGGGCAGGGTTAACTCTGGAACGCGAGGATCGACTTCTGCAAAGAAAGGGAATGCTTCTGGAAGATCTAGTAAGACAGATTCAGCTAATGGGGATGGTGATGATGGGAAATCAAAGAGAGCACAATATGAAGGTCCTGATCCCGACTTGGCTGAAATGCTTGAAAGAGATGTCTTAGAAACCTCTCCCGGAGTCAGGTGGGATGATGTTGCCGGCCTCACCGAAGCCAAAAGGCTTCTAGAAGAAGCTGTCGTACTTCCACTATGGATGCCTGAGTATTTCCAGGGAATTAGGAGACCGTGGAAAGGTGTTCTCATGTTTGGTCCTCCAGGAACTGGGAAGACACTTCTTGCTAAAGCTGTTGCTACTGAATGTGGTACCACTTTCTTCAATGTTTCTTCTGCTACTTTGGCTTCTAAATGGCGTGGCGAGAGTGAGCGCATGGTACGGTGTTTGTTTGATCTTGCAAGAGCATATGCGCCAAGTACAATTTTCATTGATGAAATTGATTCTCTATGCAATGCTAGAGGGGCTTCTGGGGAGCATGAATCATCCAGAAGGGTGAAATCTGAACTTTTAGTTCAGGTTGATGGTGTAAATAATACTTCGACGAATGAAGATGGCAGCCGTAAAATAGTTATGGTTTTGGCAGCCACTAACTTCCCATGGGACATTGATGAGGCACTAAGGTTTGTATTTGCTTCTCTGCATTCTTTTCTTCTTAGGTTAAGAAGGCTGGAAAAGCGTATATATATTCCTCTTCCAAATTTTGAGAGTCGTAAAGAGCTGATTCGTATCAATTTGAAGACTGTAGAGGCAAGTTATTGTGATTCTGTGGCCACCGACGTCAACGTAGATGATGTGGCTCGCAGAACAGAGGGCTATAGTGGAGATGATCTGACTAATGTCTGCCGTGATGCTTCCTTGAATGGTATGAGGCGTAAGATAGCAGGAAAGACTCGTGATGAGATCAAGAACATGCCCAAAGATGAGATTTCAAAGGATCCTGTTGCCATGTGTGATTTTGAAGAAGCTTTGAAGAAAGTCCAAAGAAGTGTTTCTCAGGCTGACATTGATCGCCATGAGAAGTGGTTTCATGAATTTGGATCAGCATAA 1668 0.4478 MSGALTGLQDHLKLAREYALEGLYDTSIIFFDGAIAQINKHLNSVDDPLIRSKWMNVKKALSEETEVVKQLDAEIRAFKEIPTANSRRPPSPPISVSSAKSNFTFQPLDEYPTSSSSGGGGGSGGFNNPMDDPDVWRPPSRDTSRRPQATRNVKKDGAWARGATTRTSTTVAAATNARAGAGGRVGRVNSGTRGSTSAKKGNASGRSSKTDSANGDGDDGKSKRAQYEGPDPDLAEMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTSTNEDGSRKIVMVLAATNFPWDIDEALRFVFASLHSFLLRLRRLEKRIYIPLPNFESRKELIRINLKTVEASYCDSVATDVNVDDVARRTEGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMPKDEISKDPVAMCDFEEALKKVQRSVSQADIDRHEKWFHEFGSA 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1151 555 SMART AAA_5 284 440 IPR003593 -
Lal10g1151 555 PANTHER AAA DOMAIN-CONTAINING 4 555 - -
Lal10g1151 555 Gene3D - 246 545 IPR027417 -
Lal10g1151 555 PANTHER KATANIN P60 ATPASE-CONTAINING SUBUNIT A1 4 555 - -
Lal10g1151 555 CDD AAA 282 415 - -
Lal10g1151 555 MobiDBLite consensus disorder prediction 212 232 - -
Lal10g1151 555 Gene3D - 1 79 - -
Lal10g1151 555 Gene3D - 439 531 - -
Lal10g1151 555 Pfam ATPase family associated with various cellular activities (AAA) 288 414 IPR003959 GO:0005524|GO:0016887
Lal10g1151 555 Hamap Meiotic spindle formation protein mei-1 [mei-1]. 6 555 IPR028596 GO:0008017|GO:0008568|GO:0051013
Lal10g1151 555 MobiDBLite consensus disorder prediction 189 211 - -
Lal10g1151 555 MobiDBLite consensus disorder prediction 105 123 - -
Lal10g1151 555 Pfam AAA+ lid domain 466 507 IPR041569 -
Lal10g1151 555 MobiDBLite consensus disorder prediction 105 232 - -
Lal10g1151 555 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 248 552 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1151 Lal-Chr10 18201211 18205127 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g1151 240 547 Calmodulin-binding Proteins AT3G56690 38.462 9.77e-48 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1151 K07767 - rcu:8271350 836.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g1151 10 18201211 18205127 Lal10g1151 10 18201211 18205127 ECH
Lal8g0182 8 1224064 1228189 Lal10g1151 10 18201211 18205127 ECH
Lal25g0234 25 1615727 1620710 Lal10g1151 10 18201211 18205127 LSH
Lal10g1151 10 18201211 18205127 Lal8g0182 8 1224064 1228189 LSH
Lal25g0271 25 1862111 1866019 Lal10g1151 10 18201211 18205127 LSH
Lal10g1151 10 18201211 18205127 Lal8g0224 8 1503926 1509789 LSH
Lal10g1151 10 18201211 18205127 Lal9g0323 9 2134102 2138831 PCT
Lal9g0323 9 2134102 2138831 Lal10g1151 10 18201211 18205127 PCT