Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1001 ATGAATCGCCAGAAATCCATACTATCATTCTTTCAGAAAACCGCACCGGGAACCGACACTTCCGGTGGCCGGCGAGGATCCGATTCGTCGTTTCAGCAATCTAACCGTAATAATGTCACGGCCGCTTCCGTTCAACCACCCTCCGACGATGTCAAAGGAACCGATACGCCACCGGAGAAGGTGCCACGTCAGATCTTACCGTCGAGTTTCGCACCGAAGGAGAACAACAACCTCTTCGACAGCATCATGCATAAATTCGTCAAGGTCGACGATAGCGAAAAAGTGAATCACAGAAGTGACGTTAAGGGTTTGCCTAAACCGTATTCATCAGTGGGAATATTAAATGATGCCAACCGTAAAGCATTGCAAAAGGAAGAGGCAAGTTTTCAATTTCAACCTATGGTGAAAGATGATAGTATAAGTTTCAAGGGAAAGACTAACCACAGAGGATTGCAAAAGGAAGAAGTGGCTTTTCCATTTAAAAATATGGTGAAAGATAATGGTGTAAATTTCACGGAAAATATAAGCCGTAAAGGATTGCAAAATTTTCAGTTTCAACCTATGGCGAAAGATAATGCTGTACATTTCAAGGAAAAGACTAATCAGAATAATGTGGTCCATGTTGAAACTGATGATGACATTACTGGACCAGAAACCCCAGGGGTGAAGTCTCTTGCCTCACATGCAAAGCGAGGTCGAGAGGATGGATCCAAGTCTCAGTCCATGCTGGATTCTAGCAAGCGAGTGAGATTCATTGAGGATTTTACGGAAACAAATATGACTAAGAAGGAAGCGGAAGTGGCTAGCAGGTTTGAGTGGCTGGATCCTTCTCGAATCAGGGATGCTAATGGAAGAAGGCCTAATGATCCTTTGTATGACAGAACGACACTTTATATACCTCCAGAAGTTTTGAAAAAGATGACAGCATCTCAAAAACAGTATTGGAGTGTGAAATGTAAATATATGGATGTTATGCTATTTTTTAAAGTGGGAAAGTTTTACGAGCTCTATGAAATGGATGCTGAAATTGGCCATAAGGAGCTTGATTGGAAAATGACATTGAGTGGCGTGGGAAAATGCCGGCAGGTTGGGATATCTGAAAGTGGTATTGATGATGCTGTTCAAAACCTGGTTGCTCGTGGATATAAGGTTGGGCGAGTGGAGCAGTTGGAGACATCTGAAGAAGCAAAAGCTAGAGGAGCTAATTCTGTTATTATGAGAAAGCTAGCTCAAGTTGTCACTCCATCAACCTCTGTGGATGGTGATATTGGCCCTGATACCAATCACCTTCTCGCTATAAAAGAGGAAAACAATGACTTGGACAAGGGTTCAGTTGTATATGGATTTGCTTTTGTTGATTGTGCTCGTCTTAGGTTTTGGGTCGGTTCCATTGATGATGATGCATCTTGTTCTGCTTTGGGTGCTTTATTAATGCAAGTGTCACCTAAGGAAATTATATATGAAAGCAGAGGGCTGTCTAAAGAAGCTCAGAAAGCACTTAGAAAATTTTCGTTAAATGGTTCCACAGCATTGCAGTTGACTCCAGTGCAGTCAATCAGTGACTTGATGAACTCTGAAATTCATGATTTAGTTCACTCGAAGGGATACTTTAAGGGGTCGTCTCATTCACTGGATAATGTGCTGAGCAAAGTGGTTCATCGTGAAATCTCTGCGTCTGCTCTTGGTGGACTGGTTGGTCATCTGGATAGATTGATGTTAGATGATGTCCTACAGAATGGAGATATATATCCATATCAAGTTTACAAAGGTTGCCTCAAAATGGATGGCCAGACATTGATAAATTTAGAGATCTTTGGCAATAATGTGGATGGTACATTATACAAATATCTTGATAATTGTGTGACATCATCTGGGAAACGGCTTCTCAGGAACTGGATCTGCCGTCCATTAAAAGATGTTGAAGGACTTAATAACAGGCTTGATGTAGTTGATGATCTAATGGCTCGACCAGAGATTGTGTCACATATTGCTCGACATCTTCACACACTTCCAGATTTGGAACTATTACTTGGCCGAATTAAGTCTAGCCTTCACCTATCAGACCCTCTGTTACTGCCCCTGTTGGTTACAAAAATATTGAAGCGGAGGGTCAAAGTGTTTGGGTCACTTGTGAAAGGGCTTCGGACTGCTTTGAGTTTATTGCTTCTTCTACAGAATGAAAAGCCACTTATATCATCATTGGCCAAAGTTTTTAAACTTCCAATCTTGACTGGTAGTGATGGGCTTGATCAATTTCTTGCTCAGTTTGAGGCAGCTGTAGATAGCGATTTCCCAAATTACCTGAATCATAATGTAACAGATTCAGATGCTGAAACACTCACAATACTTTCTGAATTATTTTTGGAGAAAGCTGCTCAATGGTTTGAAGTTGTTCACGCCATCAATTGCATTGATGTACTGAGATCTTTTGCTATCATTTCTAGTTTTTCATCTGTCAGAACTATGTCTAGGCCTGTTATTTTGCCATCCTCGGAAAGTGCAAGTAAAGACAGTGGACAACCTGTGCTTAAAATGAAAGGGCTATGGCATCCATTTGCCTTTGGAGAGAATGGATGTGTGCCTGTCCCCAATGACATAATTCTTGGTGATAATGAGGTTGGGAATCATCCTCGCACATTGCTGCTGACTGGACCAAACATGGGAGGAAAGTCCACACTTTTGCGTGTCACCTGTCTAGCTGTTATAATGGCCCAGCTAGGCTGTTATGTTCCATGTGAAAATTGTGTTCTCTCGGTTGTGGATATCATCTTCACACGGCTTGGAGCCACAGACAGAATCATGGCAGGAGAGAGTACCTTCTTTATTGAGTGTTCAGAAACTGCATCTGTGCTTCAGAATGCTACACAAAATTCCCTGGTTATACTTGATGAACTGGGTCGAGGAACAAGCACTTTTGATGGCTATGCCATTGCATATGCAGTATTTCGTCATCTGGTTGAAAAGGTCAATTGTCGGTTGCTCTTTGCCACACATTACCATCCACTAACGAAAGAGTTTGCCTCTCATCCACATGTTACCATGCAACACATGGCTTGTGCTTTACGTGATCATGGGTTAGTCTTCCTATATAGGCTCACCCCAGGACCATGTCCAGAGAGCTATGGTTTGAAGGTTGCTCTCATGGCTGGGATCCCAGAACATACTGTAAACATAGCTTTAAAGGCTAGCCAACAGATGAAAAATTCAATTGGCAAAAGTTTTAGGTCAAGTGAACAAAGATCAGAATTCTCAACTCTTCATGAAGAATGGTTAAAGACCTTGGTATCTATCTCACAAATAAAGGATTATGAATCAGTTGATGATGACACTTTTGATTCATTAGTTTGTTTGTGGTATGAAATGAAGAATTCATTCAGACCAGGCAACTAG 3390 0.4159 MNRQKSILSFFQKTAPGTDTSGGRRGSDSSFQQSNRNNVTAASVQPPSDDVKGTDTPPEKVPRQILPSSFAPKENNNLFDSIMHKFVKVDDSEKVNHRSDVKGLPKPYSSVGILNDANRKALQKEEASFQFQPMVKDDSISFKGKTNHRGLQKEEVAFPFKNMVKDNGVNFTENISRKGLQNFQFQPMAKDNAVHFKEKTNQNNVVHVETDDDITGPETPGVKSLASHAKRGREDGSKSQSMLDSSKRVRFIEDFTETNMTKKEAEVASRFEWLDPSRIRDANGRRPNDPLYDRTTLYIPPEVLKKMTASQKQYWSVKCKYMDVMLFFKVGKFYELYEMDAEIGHKELDWKMTLSGVGKCRQVGISESGIDDAVQNLVARGYKVGRVEQLETSEEAKARGANSVIMRKLAQVVTPSTSVDGDIGPDTNHLLAIKEENNDLDKGSVVYGFAFVDCARLRFWVGSIDDDASCSALGALLMQVSPKEIIYESRGLSKEAQKALRKFSLNGSTALQLTPVQSISDLMNSEIHDLVHSKGYFKGSSHSLDNVLSKVVHREISASALGGLVGHLDRLMLDDVLQNGDIYPYQVYKGCLKMDGQTLINLEIFGNNVDGTLYKYLDNCVTSSGKRLLRNWICRPLKDVEGLNNRLDVVDDLMARPEIVSHIARHLHTLPDLELLLGRIKSSLHLSDPLLLPLLVTKILKRRVKVFGSLVKGLRTALSLLLLLQNEKPLISSLAKVFKLPILTGSDGLDQFLAQFEAAVDSDFPNYLNHNVTDSDAETLTILSELFLEKAAQWFEVVHAINCIDVLRSFAIISSFSSVRTMSRPVILPSSESASKDSGQPVLKMKGLWHPFAFGENGCVPVPNDIILGDNEVGNHPRTLLLTGPNMGGKSTLLRVTCLAVIMAQLGCYVPCENCVLSVVDIIFTRLGATDRIMAGESTFFIECSETASVLQNATQNSLVILDELGRGTSTFDGYAIAYAVFRHLVEKVNCRLLFATHYHPLTKEFASHPHVTMQHMACALRDHGLVFLYRLTPGPCPESYGLKVALMAGIPEHTVNIALKASQQMKNSIGKSFRSSEQRSEFSTLHEEWLKTLVSISQIKDYESVDDDTFDSLVCLWYEMKNSFRPGN 1129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1001 1129 MobiDBLite consensus disorder prediction 210 244 - -
Lal10g1001 1129 Pfam MutS domain III 597 811 IPR007696 GO:0005524|GO:0006298|GO:0030983
Lal10g1001 1129 SUPERFAMILY DNA repair protein MutS, domain III 595 815 IPR036187 -
Lal10g1001 1129 MobiDBLite consensus disorder prediction 227 244 - -
Lal10g1001 1129 Gene3D DNA repair protein MutS, domain I 266 425 IPR016151 GO:0005524|GO:0006298|GO:0030983
Lal10g1001 1129 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 292 1121 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Lal10g1001 1129 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 839 1068 IPR027417 -
Lal10g1001 1129 MobiDBLite consensus disorder prediction 1 74 - -
Lal10g1001 1129 Pfam MutS domain II 428 578 IPR007860 GO:0005524|GO:0006298|GO:0030983
Lal10g1001 1129 Gene3D - 595 819 - -
Lal10g1001 1129 CDD ABC_MSH6_euk 844 1059 - -
Lal10g1001 1129 SMART DNAend 608 856 IPR007696 GO:0005524|GO:0006298|GO:0030983
Lal10g1001 1129 Pfam MutS domain I 309 420 IPR007695 GO:0005524|GO:0006298|GO:0030983
Lal10g1001 1129 MobiDBLite consensus disorder prediction 1 50 - -
Lal10g1001 1129 SUPERFAMILY DNA repair protein MutS, domain I 296 417 IPR016151 GO:0005524|GO:0006298|GO:0030983
Lal10g1001 1129 PIRSF Msh6 1 765 IPR017261 GO:0006298|GO:0030983
Lal10g1001 1129 PIRSF Msh6 768 1113 IPR017261 GO:0006298|GO:0030983
Lal10g1001 1129 Pfam MutS domain V 881 1066 IPR000432 GO:0005524|GO:0006298|GO:0030983
Lal10g1001 1129 ProSitePatterns DNA mismatch repair proteins mutS family signature. 958 974 IPR000432 GO:0005524|GO:0006298|GO:0030983
Lal10g1001 1129 Gene3D - 835 1111 IPR027417 -
Lal10g1001 1129 Gene3D MutS, connector domain 427 594 IPR036678 GO:0005524|GO:0006298|GO:0030983
Lal10g1001 1129 SUPERFAMILY DNA repair protein MutS, domain II 426 607 IPR036678 GO:0005524|GO:0006298|GO:0030983
Lal10g1001 1129 SMART mutATP5 877 1064 IPR000432 GO:0005524|GO:0006298|GO:0030983
Lal10g1001 1129 PANTHER DNA MISMATCH REPAIR PROTEIN MSH7 292 1121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1001 Lal-Chr10 17208778 17217141 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1001 K08737 - gmx:100818859 1572.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g1001 10 17208778 17217141 Lal10g1001 10 17208778 17217141 ECH