Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0842 ATGTCGACTAATAATGTTTTTTCCGATGTTCCTTATGACCGTAGCGATTTCTATGATATTTCGTGGCTAAACCAAAACCCCATTCAGATGAATCAAATTTCGTTGGAAGAAGCTTTTGCTCGTCTCTCTTTCAACCACATGCCATTGGGTTTCAATAGTTATGGTTTACCTTCTCGTTCTAATCGCTACGATGTTGGAGCAATTCCGTCGCAAAATTCTGGTTATGGTGCTGCTTCGTCATTGGTGAGTCAAAAACAGTTTCAGAGGTTTCATTCTAATGAAGAGTTACTATGCAGTGCTGAATTCCAACGAAGGTTTCACGGTAGTGTGTTGAATGAGTTAAGAAATAACACTAATGGATTGAATATTACTAATAATGTTCGACGTAATCAAAGGTGGCTGCAGCAGCAGCAGCAACAACAGAATTTGAATCATCGTTCTATCTATGATTTTCGGGGTAGGATTGTGTTGTTGGCTATGGAACAAGGTGGGTGTCGGGTTTTGCAGGAAATTATGAAGAGGTTGAAATCACAGGAAGAGATTTCATTCATTTTTATGGAGCTGATAAATAATGTGATGGAGTTGATGATGGACCCTTTTGGAAATTATGTTTTTCAGAAGCTTGTGGAAATATGTTCTGAACAACAGAGGACTCACATTATTTTAGTGGTGACCAATTCTGATTTTCATTTTGTCAATATGTGTCTTGACATTCATGGGACCCGTGCTGTTCAGAAATTATTGGAACATGTCAGCACCCAGGAACAACGATCTCTTATTATGTCAGCACTAAGCCCAGGTGCTGTTGCATTGACCAAGGATACCAATGGTATTCATGTGGTAGAGCATTGTCTAAAGCATTTCTCAAATGAAGATAATAGGTATCTTCTCAATGTTGTGGCGAACAACTGCTTCGAAATCGCAACGGACAAGAGCGGGTGTTGCGTAATGCATCATTGCCTTGACTATGCTCGGGGAGAAACTAAAGAGCTGCTAATGGCTGAGATCATAGTGAATGCTTCACTCCTATCAGAAGACTGTTATGGAAACTATGTGGTGCAACATTTAGTGGCTATGAAAATACCGCGAGTTACAGAAAATCTACTGAGACATCTTGAAGGGAAGTTTCTATTTCTTTCATGCAATAAGTATGGGAGTAATGTGGTGGAGAGGATCTTTCTAGTGTCAGAAGAACAATATTCTGCACAGATAATTTTGGAGTTGCTTCACCATCCAAATGTTTCAAGACTACTTGTCGATCCGTTCGGAAATTATGTAACCAAAACTGCACTCATGGTGTCCAAGGGTGCCATTCATAATGCCATACTGGAGCTGATTCAGCTGCATTCTGCAATGATGCGTAGCAACATCTATGGCAAAAAGTTACTCGATCGGGTTGACAGCGGAAAAATTCGGCATATGTAG 1425 0.4014 MSTNNVFSDVPYDRSDFYDISWLNQNPIQMNQISLEEAFARLSFNHMPLGFNSYGLPSRSNRYDVGAIPSQNSGYGAASSLVSQKQFQRFHSNEELLCSAEFQRRFHGSVLNELRNNTNGLNITNNVRRNQRWLQQQQQQQNLNHRSIYDFRGRIVLLAMEQGGCRVLQEIMKRLKSQEEISFIFMELINNVMELMMDPFGNYVFQKLVEICSEQQRTHIILVVTNSDFHFVNMCLDIHGTRAVQKLLEHVSTQEQRSLIMSALSPGAVALTKDTNGIHVVEHCLKHFSNEDNRYLLNVVANNCFEIATDKSGCCVMHHCLDYARGETKELLMAEIIVNASLLSEDCYGNYVVQHLVAMKIPRVTENLLRHLEGKFLFLSCNKYGSNVVERIFLVSEEQYSAQIILELLHHPNVSRLLVDPFGNYVTKTALMVSKGAIHNAILELIQLHSAMMRSNIYGKKLLDRVDSGKIRHM 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0842 474 CDD Pumilio 153 466 IPR033712 GO:0003723
Lal10g0842 474 PANTHER PUMILIO HOMOLOG 15 62 464 - -
Lal10g0842 474 ProSiteProfiles Pumilio RNA-binding repeat profile. 150 186 IPR001313 GO:0003723
Lal10g0842 474 Gene3D - 131 472 IPR011989 -
Lal10g0842 474 Pfam Pumilio-family RNA binding repeat 303 337 IPR001313 GO:0003723
Lal10g0842 474 Pfam Pumilio-family RNA binding repeat 230 264 IPR001313 GO:0003723
Lal10g0842 474 Pfam Pumilio-family RNA binding repeat 269 299 IPR001313 GO:0003723
Lal10g0842 474 Pfam Pumilio-family RNA binding repeat 377 409 IPR001313 GO:0003723
Lal10g0842 474 Pfam Pumilio-family RNA binding repeat 191 223 IPR001313 GO:0003723
Lal10g0842 474 Pfam Pumilio-family RNA binding repeat 154 189 IPR001313 GO:0003723
Lal10g0842 474 Pfam Pumilio-family RNA binding repeat 343 356 IPR001313 GO:0003723
Lal10g0842 474 ProSiteProfiles Pumilio RNA-binding repeat profile. 187 222 IPR001313 GO:0003723
Lal10g0842 474 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 129 470 IPR033133 GO:0003723
Lal10g0842 474 SUPERFAMILY ARM repeat 141 466 IPR016024 -
Lal10g0842 474 ProSiteProfiles Pumilio RNA-binding repeat profile. 298 334 IPR001313 GO:0003723
Lal10g0842 474 SMART pum_5 409 444 IPR001313 GO:0003723
Lal10g0842 474 SMART pum_5 299 334 IPR001313 GO:0003723
Lal10g0842 474 SMART pum_5 335 370 IPR001313 GO:0003723
Lal10g0842 474 SMART pum_5 187 222 IPR001313 GO:0003723
Lal10g0842 474 SMART pum_5 226 262 IPR001313 GO:0003723
Lal10g0842 474 SMART pum_5 150 186 IPR001313 GO:0003723
Lal10g0842 474 SMART pum_5 263 298 IPR001313 GO:0003723
Lal10g0842 474 SMART pum_5 371 406 IPR001313 GO:0003723
Lal10g0842 474 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 62 464 - -
Lal10g0842 474 ProSiteProfiles Pumilio RNA-binding repeat profile. 223 262 IPR001313 GO:0003723
Lal10g0842 474 ProSiteProfiles Pumilio RNA-binding repeat profile. 371 407 IPR001313 GO:0003723
Lal10g0842 474 ProSiteProfiles Pumilio RNA-binding repeat profile. 335 370 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0842 Lal-Chr10 16002816 16006473 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0842 - - aprc:113874129 458.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g0842 10 16002816 16006473 Lal10g0842 10 16002816 16006473 ECH