Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0825 ATGTCTGGAGTAGCTCGTAGCCGTTTAGCTGCAGAGAGAAAAGCTTGGCGTCAGAATCATCCATATGGTTTTGTAGCAAAGCCATATATTGGACCAGATGGATCGGTGAATTTAATGATGTGGAATTGCTTTATTCCTGGCGAGGCTGGAACATGCTGGGAGAAAGGACATTATCCCATAACTCTTATCTTCAATGAAAACTACCCAACCCAATCTCCAAGGTGCCACTTTCCTTACGGGTTCTTACATCCTAATGTCTATAAAGATAGTGGGGAAGTATGTCTTTCAATCATTGGCTATGATTGGAAACCTGAAATTACTGTAAAGCAAATTCTTATGGGTATTCAGTTTCTGCTGAACAATCCTAATCCCGCTAGTCCTGCAAATTCTGAATTCAAAATGGTTTTTGTCCAGGATCGTGTTGAATATGAAAGAAAGGTGCGAGAGCAGGCCCAACAATATTCGCGTGTGCTTTTTTAG 480 0.4125 MSGVARSRLAAERKAWRQNHPYGFVAKPYIGPDGSVNLMMWNCFIPGEAGTCWEKGHYPITLIFNENYPTQSPRCHFPYGFLHPNVYKDSGEVCLSIIGYDWKPEITVKQILMGIQFLLNNPNPASPANSEFKMVFVQDRVEYERKVREQAQQYSRVLF 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0825 159 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 4 156 IPR000608 -
Lal10g0825 159 SMART ubc_7 7 156 - -
Lal10g0825 159 Pfam Ubiquitin-conjugating enzyme 8 150 IPR000608 -
Lal10g0825 159 PANTHER - 2 155 - -
Lal10g0825 159 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 82 98 IPR023313 -
Lal10g0825 159 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 155 - -
Lal10g0825 159 SUPERFAMILY UBC-like 2 154 IPR016135 -
Lal10g0825 159 CDD UBCc 7 151 IPR000608 -
Lal10g0825 159 Gene3D Ubiquitin Conjugating Enzyme 1 158 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0825 Lal-Chr10 15891933 15893292 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0825 K10577 - pvy:116128691 214.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g0825 10 15891933 15893292 Lal10g0825 10 15891933 15893292 ECH