Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0735 ATGGCCGACGAATCTCAATACTCTGATACCACTCCACCCTCCTTGAAGCGCAAATATGACGACCAATCCTCCGCCGCCGCCGACTCCGTCCTCACCGCCGGCATCGAACTCGCTAAACAGAAAGCTCAAGAAGTCGCCGCTCGTCTCTTGAACAATGCCCCTCTTCCAACCACCGTCGACCCTTCCAAGCGCTCTAAACCCGATAACGGTTTCGATTCCGTTGATTTGAAGGCTCAATACCCGGTATCTACATTTTCTCCTTCTGTGGGTTCTTACGGACATCAGGGTGCTGCAAGCAAGAAGATCGATATCCCTAATGGGAGGGTGGGTGTCATAATTGGCAAAGGTGGTGAGACTATCAAGTACCTTCAGCTGCAGTCAGGGGCAAAAATCCAAATTACTCGTGACAGTGATGCTGATCCGAATTCTCCTACTCGGATGGTTGAACTTATGGGTACTCCAGATGCAATTGCTAATGCTGAGAAACTTATTAATGAAGTTCTCGCTGAGGCTGAAGCAGGAGGTTCTGGTGTTGCTACTCGCCGTCTGACTGGACAAGCTGGGTCTGACGAATATGTGACGAAGATCCCAAATAACAAGGTTGGTCTTGTTATTGGTAAAGGAGGAGAGACTATAAAGAGTATGCAAGCTTCAAGCGGAGCAAGAATTCAGGTGATTCCTCTTCATCTTCCCCCTGGTGACCCATCCACAGAGAGAACATTAAAAATTGAAGGGACCCCTGAACAAATTGAGTCTGCAAAACAATTGGTTAATGAAGTCATCAGTGGCGAGATTAATGTCTTTGGTTACTGTTTAATAGTTGGATACCATGCTCCTAAGAGTCAGGGGTTAGTATGTATTGGACCATTAGTGACACCAACATGGAATCCCTTTGTCTTTGTTGGTATTCCTTCAGTATGCCATGGTATGGGAGATGGGTTGTGCTTCTGCTGGACTCACTCAGTAATGTCACAAACCAGTACGAATCGTTTTAGAAATCCAGCAACTGGTGGTTATCCTCAGCAAGGTTACCAAGCCCGACCACCCTCTAGCTGGGCTCCCCCTGGTGCTCCTGCACAGCAACCTGGTTATGGCTATGTGCAGCCCGGAGCGTACTCTGGTCCATCACCCCAGTATAACATGTCTCAGCAACAATATGCTGGCTACCCTCCCCAGTCAGCTGGTGGATATTCCACTGGTTGGGACCAGTCTGCTGCACCACCTTCCCAGCAGTCTACTCATGGTTCTGGGTATGATTACTATAGTCAACAGCCTCCATCTCAGCAACCACAAAATCCTGGCAGTGCTGCACCTCCAGGTGATGGGTCTGCCTATAATTACAGTCAACCACCTGCTTCTGGTTATAACCAGTCTGGGCAGGGCTATGCTCAGGATGGCTATGGTGCGTATAATGCACAAGCGCAGTCCGGGTATGGTCAGCCACCATCATATGATCAGCAGCAAGGTTATGGATCAGCCCCAAGCTATGGTGGTGGGAACAACACAACACAAGAGGGACACACTCCTAATTATGGATCACAGGCAGACTCAACCCAGGTTCCACCTGTCCAACCCTCTTCAGTGACCCAGCAAGGTTATGCTTCTGGCCAACAGCCTAGCCCACACGCTGCTAACTATCCACCACAAGGATCTGCTCAGCCAGGTTATGGGGTGCCCCCAACCTCCCAAGCAGCTTATGGCAATCAACCTCAAGCCCCCTCTGGTTATGGACCTCCACAGTCTCAAAAGCCTGGTGCTACTCCACCAGTTTATGGACAGTCACAATCACCTAAAACTGTAGCAGCAGGCTATGGTCAGTCAGGGTATCCTTCTTCCCAGCCCCCAACTTCTGGATATGGTGGTGCATATGGTGCCACATCATATGGTTCTGCTTCAGGTGGTCAACCAGGTTATGGTCAGGCACCGCCATCGTATGGCAACAGTTCTTATGGTGCTGGTTACGCTCAGCCTCCAGCTTATGGCAGTGATGGTAATGCAGGTACTCGGGGAAGCTATGATGGTACCCAGACTGCTCAACAGGGTGGTGGTACTGTTGCGAAAACATCACCACCTCAGAGTTGA 2082 0.4995 MADESQYSDTTPPSLKRKYDDQSSAAADSVLTAGIELAKQKAQEVAARLLNNAPLPTTVDPSKRSKPDNGFDSVDLKAQYPVSTFSPSVGSYGHQGAASKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQITRDSDADPNSPTRMVELMGTPDAIANAEKLINEVLAEAEAGGSGVATRRLTGQAGSDEYVTKIPNNKVGLVIGKGGETIKSMQASSGARIQVIPLHLPPGDPSTERTLKIEGTPEQIESAKQLVNEVISGEINVFGYCLIVGYHAPKSQGLVCIGPLVTPTWNPFVFVGIPSVCHGMGDGLCFCWTHSVMSQTSTNRFRNPATGGYPQQGYQARPPSSWAPPGAPAQQPGYGYVQPGAYSGPSPQYNMSQQQYAGYPPQSAGGYSTGWDQSAAPPSQQSTHGSGYDYYSQQPPSQQPQNPGSAAPPGDGSAYNYSQPPASGYNQSGQGYAQDGYGAYNAQAQSGYGQPPSYDQQQGYGSAPSYGGGNNTTQEGHTPNYGSQADSTQVPPVQPSSVTQQGYASGQQPSPHAANYPPQGSAQPGYGVPPTSQAAYGNQPQAPSGYGPPQSQKPGATPPVYGQSQSPKTVAAGYGQSGYPSSQPPTSGYGGAYGATSYGSASGGQPGYGQAPPSYGNSSYGAGYAQPPAYGSDGNAGTRGSYDGTQTAQQGGGTVAKTSPPQS 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0735 693 Pfam KH domain 101 166 IPR004088 GO:0003723
Lal10g0735 693 Pfam KH domain 195 259 IPR004088 GO:0003723
Lal10g0735 693 ProSiteProfiles Type-1 KH domain profile. 97 164 - -
Lal10g0735 693 MobiDBLite consensus disorder prediction 555 620 - -
Lal10g0735 693 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 53 286 - -
Lal10g0735 693 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 328 677 - -
Lal10g0735 693 CDD KH-I 195 257 - -
Lal10g0735 693 ProSiteProfiles Type-1 KH domain profile. 189 257 - -
Lal10g0735 693 MobiDBLite consensus disorder prediction 373 436 - -
Lal10g0735 693 CDD KH-I 99 164 - -
Lal10g0735 693 Gene3D K Homology domain, type 1 89 191 IPR036612 GO:0003723
Lal10g0735 693 MobiDBLite consensus disorder prediction 1 23 - -
Lal10g0735 693 PANTHER K DOMAIN-CONTAINING PROTEIN-RELATED 328 677 - -
Lal10g0735 693 PANTHER K DOMAIN-CONTAINING PROTEIN-RELATED 53 286 - -
Lal10g0735 693 MobiDBLite consensus disorder prediction 446 547 - -
Lal10g0735 693 MobiDBLite consensus disorder prediction 329 693 - -
Lal10g0735 693 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 99 175 IPR036612 GO:0003723
Lal10g0735 693 MobiDBLite consensus disorder prediction 668 693 - -
Lal10g0735 693 SMART kh_6 96 169 IPR004087 GO:0003676
Lal10g0735 693 SMART kh_6 188 262 IPR004087 GO:0003676
Lal10g0735 693 MobiDBLite consensus disorder prediction 50 74 - -
Lal10g0735 693 MobiDBLite consensus disorder prediction 329 348 - -
Lal10g0735 693 Gene3D K Homology domain, type 1 193 264 IPR036612 GO:0003723
Lal10g0735 693 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 188 263 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0735 Lal-Chr10 15075635 15082050 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0735 K13210 - gmx:100813135 721.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g0735 10 15075635 15082050 Lal10g0735 10 15075635 15082050 ECH