Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0609 ATGATCACACTTATTTTTCATGTCTATGATCACACAGCAGCTCTCTCACTCCCCAAATCTAAACCGCTCCATCGCCGCCGCATTTCATTTCGCAGCTCTTATCTCCGCTCCGCCGCCATCACTAACCTCCGCGCTGCCCGTGAACAAATTATGAGTAAAATTCCAGAAAGACCACTGAATGGAGATGTAGAAGATGACGATGAAGATGAAGCTAATGATGGTCTTGAAGCCTGGGAGAGAACTTATGCAGAAGATAGATCGTGGGAGGATTTGCAAGAGGATGAATCTGGACTTCTTCGCCCCATAGATGATACAGCCATTTACCATGCCCAGTATCGCAGGCGCCTTCGTGCCCTTGCTTCCACAGCTGCTACAGCACGAATTCAGAAGGGTCTGATTCGATACCTATACGTTGTTGTTGACCTATCCAAGGCAGCTTCAGAGAGAGACTTTCGACCAAGTAGGATGGCTGTTATCGGGAGGCAGGTTGAGACATTTATCAGGGAGTTCTTTGATCAGAATCCACTTAGTCATGTTGGTCTTGTGACTATAAAAGATGGAATTGCTCATTGCTTAACAGAACTTGGCGGCAGTCCTGAGTCCCACATTAAAGCTTTGATGGGTAAACTGGAATGTTCCGGTGATGCCTCCCTACAAAATGCACTAGAGCTTGTTCTTGGTTATCTAAATCAAATTCCATCATATGGCCATCGAGAAGTTCTGATCTTATATTCAGCTCTCAGTACATGTGATCCTGGTGATCTCATGGAAACCATCCAGAAATGCAAAAGGAGTAAAATAAGGTGCTCTGTCATTGGTCTTGCTGCTGAAATGTTTATTTGCAAACATCTCTGCCAAGAAACTGGAGGAACTTATTATGTGGCACTAGATGAGACTCACTTTAAAGAGTTAATTCTTGAGCATGCACCACCACCTCCAGCAATATCTGAGTATGCTACTGCTAATTTAATTAAGATGGGCTTCCCACAAAGAGCAGCCGAGGGTTCTGTCGCAATTTGTACATGCCACGAAGAGGCTAAAATTGGAGGGGGGTACACCTGTCCAAGATGCAAAGTTCGTGTCTGTGAGCTTCCCACTGAATGTCGCATCTGTGGATTGACCCTTATTTCTTCACCCCATTTAGCAAGGTCATATCATCATCTTTTTCCTATAGTTCCGTTTGATGAGGTCTCTCCATCATCTCAAAATGATCCACATAACAGTTTACCGAACATTTGTTTTGGTTGTCAACAGAGTCTTCTTACTCAGGGAAGCAAGCCTGGACTTTCTGTTACTTGCCCAAAATGCAAACAACAATTCTGCCTTGACTGCGACATTTACATTCATGAGAGCTTACACAACTGCCCAGGCTGTGAGAGTTTCAGGCATTCTAAGTCAGTAATTGCTGCACAATAA 1416 0.4421 MITLIFHVYDHTAALSLPKSKPLHRRRISFRSSYLRSAAITNLRAAREQIMSKIPERPLNGDVEDDDEDEANDGLEAWERTYAEDRSWEDLQEDESGLLRPIDDTAIYHAQYRRRLRALASTAATARIQKGLIRYLYVVVDLSKAASERDFRPSRMAVIGRQVETFIREFFDQNPLSHVGLVTIKDGIAHCLTELGGSPESHIKALMGKLECSGDASLQNALELVLGYLNQIPSYGHREVLILYSALSTCDPGDLMETIQKCKRSKIRCSVIGLAAEMFICKHLCQETGGTYYVALDETHFKELILEHAPPPPAISEYATANLIKMGFPQRAAEGSVAICTCHEEAKIGGGYTCPRCKVRVCELPTECRICGLTLISSPHLARSYHHLFPIVPFDEVSPSSQNDPHNSLPNICFGCQQSLLTQGSKPGLSVTCPKCKQQFCLDCDIYIHESLHNCPGCESFRHSKSVIAAQ 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0609 471 SUPERFAMILY vWA-like 131 298 IPR036465 -
Lal10g0609 471 SMART VWA_4 133 309 IPR002035 -
Lal10g0609 471 Gene3D von Willebrand factor, type A domain 129 314 IPR036465 -
Lal10g0609 471 ProSiteProfiles VWFA domain profile. 135 274 IPR002035 -
Lal10g0609 471 ProSitePatterns Zinc finger C2H2 type domain signature. 433 453 IPR013087 -
Lal10g0609 471 SMART C1_4_2 412 460 IPR004595 GO:0006281|GO:0008270
Lal10g0609 471 CDD vWA_transcription_factor_IIH_type 131 313 IPR007198 -
Lal10g0609 471 Pfam TFIIH C1-like domain 413 460 IPR004595 GO:0006281|GO:0008270
Lal10g0609 471 TIGRFAM ssl1: transcription factor ssl1 351 460 IPR012170 GO:0000439|GO:0006289|GO:0006351
Lal10g0609 471 Pfam Ssl1-like 139 329 IPR007198 -
Lal10g0609 471 SUPERFAMILY Cysteine-rich domain 386 459 IPR046349 -
Lal10g0609 471 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 389 467 IPR013083 -
Lal10g0609 471 PANTHER GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 2 68 458 - -
Lal10g0609 471 PIRSF TFIIH_SSL1 41 461 IPR012170 GO:0000439|GO:0006289|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0609 Lal-Chr10 13847426 13852540 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0609 K03142 - gmx:100803090 775.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0895 8 6572496 6579877 Lal10g0609 10 13847426 13852540 LSH