Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0532 ATGGCCAACGTCCTCAGAACTCCCACCTTCAAGCCACAACCTTCGCCACGCGCCTCCGTCAACTCCCTCAAACCCACCTCCGTTGCCGTCGTGTCTTTCAGACAAAGCACTTCCTTCAGGAAAACGTCTTCACCACTCACCTCTCTGCGGTTACATAAACTCCACTCCTTCCGCTTCGCCAAGTTCGTTCCCTTTGCTTTCGACGGTAACACCGAAGCCCCTCAAGTTCAAGAACCCGAGGTTCAGGACTTGCCAGATGATGCTGTTGACAAGGAGGACATTATAGATGAGGACGTGTTTAGTGATGCTGATGGAACATCTGCTTCACCTTTCCAAGTGTTACTGCAATCTTACAAAGAAGCGTTTGCTAATAATGATGAAGCTAAAGTTGCTGAGTTGGAATCATCATTAAAATCTATCGAAGATGAGAAATTTGATCTTGAAGGGAAAATAGCTTCTTTATCTGAAGAGTTATCAACAGAAAAGAATCGGATTCTAAGGATTAGTGCAGACTTTGACAATTTTCGGAAGAGGACTGAGAGAGATCGCCTTTCACTTGTCACAAATGCTCAGGGGGAAGTTGTGGAGAGTTTGTTAGGTGTATTGGATAACTTTGAGAGGGCAAAAACTCAGATTAAGGTGGAAACAGAGGGAGAGGAAAAAATTAACAACAGCTATCAGAGCATATATAAACAGTTCTCAGAAATTCTAACCTCACTTGGAGTCAAACCAGTTGAGACAGTTGGAAGGTCCTTTGATCCATTGCTACACGAAGCAATTATGCGCGAGGATTCCACTGAATTTGAGGATGGCATCATACTTCAAGAATTCAGAAAGGGTTTTACACTTGGCGACCGACTTTTGCGTCCATCAATGGTGAAGGTATCAGCTGGTCCTGGACCTGCAAAGCCTGAACAAGAAGCACCACTAGAAGAACAAGTCACGAGTGAAATATCTGAGGCCAGTGTAGAGAATGAGAATAACACAGAAGCAGAATCTGCTTGA 1005 0.4428 MANVLRTPTFKPQPSPRASVNSLKPTSVAVVSFRQSTSFRKTSSPLTSLRLHKLHSFRFAKFVPFAFDGNTEAPQVQEPEVQDLPDDAVDKEDIIDEDVFSDADGTSASPFQVLLQSYKEAFANNDEAKVAELESSLKSIEDEKFDLEGKIASLSEELSTEKNRILRISADFDNFRKRTERDRLSLVTNAQGEVVESLLGVLDNFERAKTQIKVETEGEEKINNSYQSIYKQFSEILTSLGVKPVETVGRSFDPLLHEAIMREDSTEFEDGIILQEFRKGFTLGDRLLRPSMVKVSAGPGPAKPEQEAPLEEQVTSEISEASVENENNTEAESA 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0532 334 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 146 241 IPR013805 -
Lal10g0532 334 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 242 298 IPR009012 GO:0006457
Lal10g0532 334 PANTHER GRPE PROTEIN 30 311 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lal10g0532 334 ProSitePatterns grpE protein signature. 252 295 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lal10g0532 334 MobiDBLite consensus disorder prediction 312 334 - -
Lal10g0532 334 Pfam GrpE 137 296 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lal10g0532 334 Gene3D Head domain of nucleotide exchange factor GrpE 241 296 IPR009012 GO:0006457
Lal10g0532 334 MobiDBLite consensus disorder prediction 294 334 - -
Lal10g0532 334 MobiDBLite consensus disorder prediction 1 21 - -
Lal10g0532 334 Coils Coil 123 157 - -
Lal10g0532 334 CDD GrpE 162 295 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lal10g0532 334 Hamap Protein GrpE [grpE]. 92 297 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lal10g0532 334 PRINTS GrpE protein signature 166 182 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lal10g0532 334 PRINTS GrpE protein signature 194 209 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lal10g0532 334 PRINTS GrpE protein signature 249 264 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lal10g0532 334 PRINTS GrpE protein signature 276 295 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lal10g0532 334 PANTHER GRPE PROTEIN HOMOLOG 30 311 - -
Lal10g0532 334 Gene3D - 124 239 IPR013805 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0532 Lal-Chr10 12754116 12757938 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0532 K03687 - gmx:100820521 477.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0966 8 7350239 7353990 Lal10g0532 10 12754116 12757938 LSH