Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0028 ATGGCTTCTTCTCTTCTCTCAATAGCTTCACACACTCTCTCTTCACTCTCATTACAAAACAACGGGAAGCCTAAGGTTGGAGGAAACAATTTCAGGATTAAGAAAGAAGCACCAAACACCTTCTCAAATGCAAGGTCTTCTGGCCGTATCTCTATGGTGGCTGCGGTTAATGTTTCTCGATTTGAGGGCATTCCAATGGCTCCTCCAGATCCAATTCTTGGAGTTTCCGAAGCATTTAGAGCAGACACGAGCGATGCCAAGCTCAATCTTGGAGTTGGTGCCTACAGAACTGAAGAATTACAACCATATGTGCTTAAAGTCGTTAACAAGGCAGAAAATCTTATGCTGGAGAGAGGGGAAAACAAAGAGTATCTCGCTATTGAGGGTTTAGCTGCATTTAATAAAGCAACTGCAGAGTTGTTACTTGGAGCCGACAATCCTGCAATCAAACAACAAAGAGTTGCAACTGTCCAAGGTCTTTCTGGAACGGGTTCTCTGCGACTAGGAGCGGCTTTGATAGAACGTTATTTTCCTGGGGCAAAGGTTTTGATATCAGCTCCTACCTGGGGAAATCACAAAAATATTTTCAATGATGCTAAGGTTCCATGGTCCGAGTACCGATATTATGATCCCAAGACAGTTGGTTTGGATTTTGAGGGCATGATAGAAGATATAAAGGCAGCTCCTGAAGGAACTTTTGTTCTACTTCATGGATGTGCTCATAACCCTACTGGTATTGATCCAACACCCGAACAGTGGGAAAAAATAGCTGATGTAATTCAAGAAAAAAACCACATTCCATTTTTTGATGTTGCTTACCAGGGGTTCGCTAGTGGAAGCCTTGATGAAGATGCAGCGTCTGTGAGATTGTTTGTGTCACGTGGCTTGGAGGTTCTTGTTGCTCAGTCCTACAGTAAAAATCTTGGTCTGTATGCTGAAAGGATTGGAGCAATCAATGTCATTTCCTCATCTCCGGAATCTGCTGCAAGGGTGAAGAGCCAATTGAAAAGGATTGCACGACCAATGTACTCGAACCCACCTGTCCACGGTGCTAGGATTGTTGCCGATATTGTTGGAAACCCAGCTCTCTTCAATGAATGGAAAGTGGAGATGGAAATGATGGCTGGAAGGATAAAGAATGTTAGACAGCAGCTTTATGATAGTATTTCTTCTAAAGACAAGAGTGGAAAGGATTGGTCATTCATACTTAAGCAGATAGGCATGTTCTCATACACAGGCCTTAACAAGAACCAGAGTGACAACATGACAAATAAGTGGCATGTATACATGACAAAGGATGGAAGAATTTCCCTGGCAGGATTGTCATTGGCCAAATGTGAATACCTTGCAGATGCTATTATTGATTCATTTCACTATGTCAGCTGA 1386 0.4264 MASSLLSIASHTLSSLSLQNNGKPKVGGNNFRIKKEAPNTFSNARSSGRISMVAAVNVSRFEGIPMAPPDPILGVSEAFRADTSDAKLNLGVGAYRTEELQPYVLKVVNKAENLMLERGENKEYLAIEGLAAFNKATAELLLGADNPAIKQQRVATVQGLSGTGSLRLGAALIERYFPGAKVLISAPTWGNHKNIFNDAKVPWSEYRYYDPKTVGLDFEGMIEDIKAAPEGTFVLLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDEDAASVRLFVSRGLEVLVAQSYSKNLGLYAERIGAINVISSSPESAARVKSQLKRIARPMYSNPPVHGARIVADIVGNPALFNEWKVEMEMMAGRIKNVRQQLYDSISSKDKSGKDWSFILKQIGMFSYTGLNKNQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSFHYVS 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0028 461 PRINTS Aspartate aminotransferase signature 234 253 IPR000796 GO:0006520|GO:0008483
Lal10g0028 461 PRINTS Aspartate aminotransferase signature 265 277 IPR000796 GO:0006520|GO:0008483
Lal10g0028 461 PRINTS Aspartate aminotransferase signature 333 358 IPR000796 GO:0006520|GO:0008483
Lal10g0028 461 PRINTS Aspartate aminotransferase signature 402 420 IPR000796 GO:0006520|GO:0008483
Lal10g0028 461 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 303 316 IPR004838 GO:0003824|GO:0009058|GO:0030170
Lal10g0028 461 Gene3D - 119 360 IPR015421 GO:0003824
Lal10g0028 461 PANTHER ASPARTATE AMINOTRANSFERASE, CYTOPLASMIC 7 459 - -
Lal10g0028 461 PANTHER ASPARTATE AMINOTRANSFERASE 7 459 IPR000796 GO:0006520|GO:0008483
Lal10g0028 461 Gene3D Aspartate Aminotransferase, domain 1 64 453 IPR015422 GO:0003824
Lal10g0028 461 Pfam Aminotransferase class I and II 87 453 IPR004839 GO:0009058|GO:0030170
Lal10g0028 461 SUPERFAMILY PLP-dependent transferases 59 455 IPR015424 -
Lal10g0028 461 CDD AAT_like 88 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0028 Lal-Chr10 297944 303210 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0028 K00811 - gmx:547792 828.935