Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1223 ATGGCCTCTTTACGCCCTGCCAATGTGGGAATCCTTGCCATGGACATCTACTTCCCTCCCACCTGCGTCACCCAGGAAGCTTTGGAGGGTCATGATGGGGTGAGCAAAGGGAAATACACTATTGGGCTTGGACAGGATTGCATGGCCTTCTGCTCTGAGGTTGAAGATGTTATCTCAATGAGCTTGACGGTAGTTACTTCACTTCTCGAAAAATTTAATGTTGATCCTAAGCAAATTGGACGTTTGGAGGTTGGGAGTGAAACTGTTATTGACAAAAGCAAATCAATTAAGACCTTCCTGATGCAAGTTTTTGAGGCAAGTGGTAATATTGACATTGAAGGTGTTGATTCAACTAATGCATGCTATGGAGGAACAGCTGCTTTGTTCAATTGTGTGAATTGGGTGGAGAGTAGCTCATGGGATGGACGTTATGGACTTGTTGTATGTACAGACACTGCGGTATATGCTGAAGGACCTGCTCGTCCCACTGGAGGAGCAGCTGCAATTGCCATGCTTGTAGGGCCAGATGCTCCTATTGCTTTTGAAAGCAAACTCAGAGGCAGTCACATGTCTCATGCATATGATTTTTACAAGCCAAATCTTGCTAGTGAATATCCAGTTGTTGATGGAAAACTCTCACAGACCTGTTATCTCATGGCACTTGATTCCTGTTATCAGCTTTACTGTAAGAAATTTGAAAAATTGGAGGGGAGACCTTTTTCAATGTCAGATTCTGATTATTTTGTGTTTCATTCTCCATACAACAAGCTTGTGCAGAAAAGTTTTGGCCGACTATACTTCAATGACTTCTTGAGAAATCCCAGTTTTGTTGATGAAGTTGCCAGGGACACCCTTGCACCATATGCATCCTTATCTGGTGATGACAGTTATCAAAGTCGTGATCTTGAAAAGGCAAACCAGCAAGCTGCAAAACATCTATATGATGCAAAGGTGCAGCCCAGCACACTAATCCCAAAGCAAGTTGGTAACATGTACACTGCATCTCTTTATGCAGCATTTGCTTCTCTTCTTCACAATAAGAACAGTTCATTGGTAGGTAAACGGGTAGTTATGTTTTCATATGGAAGTGGTTTAACAGCTACAATGTTCTCCTTCCACCTTCAAGAGGGTCAACATCCTTTTAACTTGTCAAACATTGTAACAGTGATGAATGTTTCAGACAAGTTGAAGCAGAGAGTTGAGATTCCTCCTGAAAAGTTTGTTGAAACATTGAAGATCATGGAACACCGATATGGGGGGAAGGACTTTGTGACAAGCAAGGACTGTAGCTACTTACCTCCAGGCACCTTCTATCTCACCAATGTTGATTCCATGTACAGAAGATTTTATGCCAAGAAGGAGGTTATTGGTTAG 1374 0.4229 MASLRPANVGILAMDIYFPPTCVTQEALEGHDGVSKGKYTIGLGQDCMAFCSEVEDVISMSLTVVTSLLEKFNVDPKQIGRLEVGSETVIDKSKSIKTFLMQVFEASGNIDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDTAVYAEGPARPTGGAAAIAMLVGPDAPIAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYQLYCKKFEKLEGRPFSMSDSDYFVFHSPYNKLVQKSFGRLYFNDFLRNPSFVDEVARDTLAPYASLSGDDSYQSRDLEKANQQAAKHLYDAKVQPSTLIPKQVGNMYTASLYAAFASLLHNKNSSLVGKRVVMFSYGSGLTATMFSFHLQEGQHPFNLSNIVTVMNVSDKLKQRVEIPPEKFVETLKIMEHRYGGKDFVTSKDCSYLPPGTFYLTNVDSMYRRFYAKKEVIG* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1223 457 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 1 456 - -
Gso9g1223 457 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 179 453 IPR013746 GO:0004421|GO:0006084|GO:0010142
Gso9g1223 457 CDD init_cond_enzymes 8 372 - -
Gso9g1223 457 ProSitePatterns Hydroxymethylglutaryl-coenzyme A synthase active site. 109 124 IPR000590 GO:0004421|GO:0008299
Gso9g1223 457 SUPERFAMILY Thiolase-like 179 451 IPR016039 GO:0016746
Gso9g1223 457 SUPERFAMILY Thiolase-like 8 176 IPR016039 GO:0016746
Gso9g1223 457 Gene3D - 2 454 IPR016039 GO:0016746
Gso9g1223 457 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 5 178 IPR013528 -
Gso9g1223 457 TIGRFAM HMG-CoA-S_euk: hydroxymethylglutaryl-CoA synthase 6 453 IPR010122 GO:0004421|GO:0008299
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1223 Gso-Chr9 35206964 35213139 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1223 K01641 - gmx:100794889 925.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso9g1223 9 35206964 35213139 Gso9g1223 9 35206964 35213139 ECH
Gso16g1601 16 36597384 36603838 Gso9g1223 9 35206964 35213139 GST