Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0556 ATGGATTTGGAAGAGGAACAGGAGTACGACGAGCAAATGATGGAGGAAGAAGACGACGAGGAAGAGATCACGCAGGAAGACGCGTGGGCAGTTATATCTGCATACTTCGAAGAGAAAGGCCTCGTTCGTCAACAACTCGATTCCTTCGACGAGTTCATCCAGAACACCATGCAGGAAATTGTCGATGAGTCAGCAGATATTGAAATTCGACCCGAGTCGCAGCACAATCCCGGTCACCAATCCGATTTCGCCGAAACCATTTACAAGATCAGTTTCGGTCAGATTTACTTGAGTAAGCCTATGATGACGGAGTCTGATGGAGAAACCGCCACGTTGTTCCCCAAGGCTGCTAGGTTAAGGAACCTTACGTATTCTGCTCCTTTGTATGTTGATGTCTCCAAAAGGGTCATCAAGAAGGGACACGACGGTGAAGAGGTCACTGAGGCCCAGGATTTCACCAAAGTTTTCATTGGCAAGGTTCCTATAATGCTTCGGTCTAGTTATTGCACCTTGTACCAGAATTCGGAGAAGGATTTGACTGAGCTTGGGGAGTGTCCGTACGACCAAGGCGGGTATTTCATTATTAATGGGAGTGAGAAGGTTCTGATTGCTCAGGAGAAGATGAGCACCAACCATGTCTACGTGTTCAAGAAGAGGCAGCCCAACAAGTATGCCTATGTGGCCGAAGTTCGGTCCATGGCAGAGTCGCAGAACAGACCGCCCAGTACTATGTTTGTGCGCATGCTCTCTCGGACTAGTTCCAAAGGGGGTTCTTCAGGACAATATATACGTGCCACTCTTCCTTACATTCGAACGGAAATTCCCATCATTATTGTGTTTCGAGCATTGGGGTTTGTTGCTGATAAAGATATTCTAGAGCATATATGTTATGACTTCTCATATACTCAAATGATGGAGCTGCTACGTCCTTCCCTGGAAGAAGCGTTTGTAATTCAAAATCAACAGGTTGCACTTGACTACATTGGGAAAAGAGGAGCAACTGTAGGTGTGACAAAGGAAAAGAGAATTAAGTATGCTAAGGAGATCCTTCAAAAGGAGATGCTCCCTCATGTTGGCGTTGGAGAATATTGTGAGACCAAGAAAGCTTACTATTTTGGATATATCATTCACCGGCTACTGCTGTGTGCACTTGGGCGGAGGGCTGAGGATGATAGGGATCATTATGGAAACAAGAGGCTGGATCTGGCTGGTCCTTTACTTGGTGGTCTTTTCAGAATGCTATTCAGAAAGCTAACGAGAGATGTCAGGGGATATGTACAGAAGTGTGTTGATAATGGGAAAGATGTTAATCTGCAATTTGCTATCAAAGCAAAAACCATCACAAGTGGACTTAAATACTCACTTGCTACTGGTAACTGGGGGCAAGCAAATGCTGCAGGGACTAGAGCTGGAGTTTCACAGGTGCTGAATCGTTTAACTTATGCATCCACTTTATCTCACTTGCGAAGATTGAATTCCCCAATAGGGCGTGAAGGGAAGTTGGCCAAACCAAGACAGCTGCATAATTCACAATGGGGAATGATGTGTCCAGCAGAAACACCCGAAGGACAAGCCTGTGGACTGGTGAAGAATCTGGCATTGATGGTCTACATAACAGTTGGTTCAGCAGCATATCCTATTCTGGAGTTTTTGGAAGAATGGGGCACAGAGAATTTTGAGGAAATCTCTCCTGCAGTGATTCCTCAAGCCACAAAAATTTTTGTAAATGGTTGCTGGATGGGTATCCATCGTGACCCTGATATGTTGGTGAGAACATTGAAAAAGCTAAGACGTCGGGTTGATGTGAACACTGAAGTTGGGGTTGTCAGAGATATCCGTCTTAAAGAATTGCGTATATATACAGATTATGGTCGTTGCAGTCGTCCTTTATTCATTGTGGATAAGCAAAGGCTTCTCATAAAGAAGAAGGATATTCATGCTTTACAACAGAGGGAATCCCCTGAAGATGGCGGATGGCATGATCTAGTGTCCAAGGGCTTTATAGAATATATTGACACGGAAGAAGAAGAGACTACAATGATTTCCATGACAATTAATGATCTTGTACAAGCTAGGATCAATCCAGAAGATGCATATTCCGATACTTACACTCATTGTGAAATCCACCCATCACTAATTCTGGGTGTATGTGCTTCCATTATACCATTTCCTGATCACAATCAGTCCCCACGTAACACTTATCAGTCTGCAATGGGAAAGCAAGCAATGGGAATATATGTTACAAACTACCAGTTTCGAATGGATACCTTGGCCTATGTTTTATATTATCCACAAAAGCCACTGGTCACTACAAGAGCCATGGAGCATCTTCATTTCCGTCAACTCCCAGCTGGAATTAATGCCATTGTATCCATTGCCTGTTACTCTGGTTATAATCAAGAAGATTCTGTCATCATGAACCAATCGTCAATAGACCGTGGATTCTTTCGGTCTCTGTTTTTCCGTTCATATAGAGATGAAGAGAAGAAGATGGGAACCCTAGTGAAAGAAGATTTTGGCCGTCCAGATAGAGCTAACACCATGGGAATGAGACATGGTTCTTATGATAAGCTGGATGATGATGGTCTTGCCCCACCAGGCACACGAGTATCTGGTGAGGATGTTATCATTGGAAAGACCACCCCAATATCTCAGGAGGAGGCACAGGGACAAGCTTTACGTTACACAAGGCGTGATCACAGCATAAGCTTACGTCACAGTGAAACTGGAATTGTTGATCAAGTTTTGCTGACCACAAATGCTGATGGATTAAGATTTGTGAAAGTAAGAGTGAGATCTGTTCGTATACCACAGATTGGTGACAAATTCAGTAGTAGACATGGTCAGAAGGGGACAGTGGGTATGACTTATACACAAGAAGACATGCCATGGACTGTGGAAGGCATTACCCCTGATATTATTGTCAATCCACATGCTATTCCTTCTCGAATGACAATTGGTCAGCTTATTGAGTGTATCATGGGGAAGGTGGCAGCCCACATGGGAAAAGAGGGAGATGCAACTCCTTTTACAGATGTTACTGTGGACAATATCAGTAAAGCTCTACACAAGTGTGGGTACCAAATGCGTGGTTTTGAGACCATGTACAATGGTCATACAGGGAGACGTCTCAGTGCAATGATTTTCCTTGGCCCTACATATTACCAAAGACTGAAGCATATGGTTGATGATAAGATCCATTCTCGTGGAAGGGGTCCAGTGCAGATCCTCACAAGGCAACCTGCTGAGGGACGCTCACGAGATGGAGGTCTCCGATTTGGAGAGATGGAACGAGATTGCATGATAGCTCATGGAGCTGCTCACTTTTTAAAGGAAAGGTTGTTTGATCAAAGTGATGCTTACAGGGTCCATGTATGTGAGCGTTGTGGGTTGATAGCTATTGCAAATCTCAAAAAGAATTCTTTTGAGTGCAGGGGGTGCAAGAACAAAACTGACATTGTTCAGGTTTATATTCCTTATGCTTGTAAGCTCCTCTTCCAAGAGTTAATGGCTATGGCCATAGCTCCAAGAATGCTTACAAAGGAGGTCAAAACTACAAACCAAAAGAAGGGAGCCTGA 3579 0.4398 MDLEEEQEYDEQMMEEEDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTEAQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSSKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSYTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWMGIHRDPDMLVRTLKKLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDKQRLLIKKKDIHALQQRESPEDGGWHDLVSKGFIEYIDTEEEETTMISMTINDLVQARINPEDAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVSIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQALRYTRRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMLTKEVKTTNQKKGA* 1193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0556 1192 CDD RNA_pol_B_RPB2 41 1178 IPR015712 GO:0003899|GO:0006351|GO:0032549
Gso9g0556 1192 Pfam RNA polymerase Rpb2, domain 5 659 710 IPR007647 GO:0006351
Gso9g0556 1192 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 21 1182 - -
Gso9g0556 1192 Pfam RNA polymerase beta subunit 40 449 IPR007644 GO:0003677|GO:0003899|GO:0006351
Gso9g0556 1192 Gene3D RNA polymerase alpha subunit dimerisation domain 1074 1182 - -
Gso9g0556 1192 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 18 1185 IPR015712 GO:0003899|GO:0006351|GO:0032549
Gso9g0556 1192 Gene3D - 748 936 IPR014724 GO:0003899
Gso9g0556 1192 MobiDBLite consensus disorder prediction 1 23 - -
Gso9g0556 1192 Gene3D - 718 1073 IPR037033 GO:0003677|GO:0003899|GO:0006351
Gso9g0556 1192 Gene3D - 388 613 - -
Gso9g0556 1192 Pfam RNA polymerase Rpb2, domain 6 717 1087 IPR007120 GO:0003677|GO:0003899|GO:0006351
Gso9g0556 1192 Pfam RNA polymerase Rpb2, domain 2 210 401 IPR007642 GO:0003677|GO:0003899|GO:0006351
Gso9g0556 1192 Pfam RNA polymerase Rpb2, domain 3 474 538 IPR007645 GO:0003677|GO:0003899|GO:0006351
Gso9g0556 1192 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA 18 1185 - -
Gso9g0556 1192 ProSitePatterns RNA polymerases beta chain signature. 940 952 IPR007121 GO:0003677|GO:0003899|GO:0006351
Gso9g0556 1192 Pfam RNA polymerase Rpb2, domain 7 1089 1180 IPR007641 GO:0003677|GO:0003899|GO:0006351
Gso9g0556 1192 Coils Coil 6 26 - -
Gso9g0556 1192 Pfam RNA polymerase Rpb2, domain 4 573 634 IPR007646 GO:0003677|GO:0003899|GO:0006351
Gso9g0556 1192 Gene3D RNA polymerase Rpb2, domain 2 211 387 IPR037034 GO:0003677|GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0556 Gso-Chr9 6325630 6333955 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0556 K03010 - gmx:100790162 2344.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1417 15 15737534 15745674 Gso9g0556 9 6325630 6333955 GST