Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0436 ATGGCAAGAAAAACTTTAGCTTGGTCCTTGCTTCTAGGGATGGCTTGTTCCATAGTTATTGGTTCATATGAGGAGAGCTTTCCTCCTAGGACATTTTCTAGTAACAACTATCATGAAGCAATACAAAGATTGCAGTCATTTAAGGCCTCTCTAACAAGACATGATTCCATTGCTTCAGCCTCATCTTCCTTATCAACCTTCTCAAGCCCTTCTTCTGCTCCTTCTCCTTCTCTCTCACTTCAGGGCGTGAACAATCCACGCGTGTACCGTGTGACGTCTTATGGTGCAGATCCAACGGGTAATTCGGATAGCACTGAAGCACTCCTTGCAGCCATAGAAGATGCAGCCAAGGGTCCTAGTGAAGGATATTTGATGGAAGGCATCAGAGACCTTGGAGGTGCTCAGATTAATCTTGAGGGTGGAAATTACTTGATCAGCCGGTCACTCAAGTTGCCGGTGGCCGGGGTGGGGAACCTTATGATACATGGAGGGACTATAAGAGCCTCAGATAATTTTCCAGAAGACGGCTATATCATTGATTTGTCACCCTCTTCTAATGGAAGAAACAGTTTACCATCCTACAATTTTGAGTTCATAACTCTCAAGGAACTCTTGCTGGACTCAAACTTCAGGGGTGGAGGCATTTCAGTCATAAACTCACTTAGGACTAACATAGACAATTGTTACATCACACATTTCACCACCAATGGAATTTTAGTCCAAAGTGGTCATGAAACATACATCAGGAACTCTTTCCTCGGCCAGCATATAACTGCTGGCGGCGACAAAAATGAGAGGAACTTCTCAGGCACTGGAATAACCCTCCAGGGTAATGACAATGCTGTCACTGATGTTGTAATTTTCTCTGCTGCTATAGGAATAATGGTTACTGGTCAAGCTAATGCCTTTTCTGGTGTACATTGTTACAATAAGGCCACTGGCTTTGGAGGCACTGGAATTTATTTGAAACTACCAGGTTTGACCCAAACCAGGATTGTGAATTCTTACATGGATTACACTAGTATTGTGGCGGAAGACCCGGTTCAACTCCATATCTCCAGCAGTTTCTTCCTTGGTGATGCCAATATTGTCCTAAAGTCCAAGAATGGAATTGTGAATGGTGTTGATATTGTTGATAACATGTTCTCAGGTTCAAATCAGGGTGTTGAAATTGTTCAGCTTGACCAATCAAATAGTCCTTTCCAACAAATTGATCAAGTTATTGTTGATAGAAACATTGCAAGGGGGATGAAGTTAAAGGCCACAGTTGCCAAAATGTCTATGCAAGGGAATGGAACCTCTTGGAGTGTTGATTTTAACAATGTTTTGCTTTTTCCTAACCTCATAAAGAATGTTCAGTACTCTTTAAGCTCCTCAGGCAGCACCTTCCCCAATCATGCTCTGAGGAACGTGTCCGAGAATCGTGTTGTGATTGAAACAAATGAAGCAGTGGCTGCCAATGTTTTTGTTACGGTGGATCAAAGTGCGTTAAGTTGA 1497 0.4269 MARKTLAWSLLLGMACSIVIGSYEESFPPRTFSSNNYHEAIQRLQSFKASLTRHDSIASASSSLSTFSSPSSAPSPSLSLQGVNNPRVYRVTSYGADPTGNSDSTEALLAAIEDAAKGPSEGYLMEGIRDLGGAQINLEGGNYLISRSLKLPVAGVGNLMIHGGTIRASDNFPEDGYIIDLSPSSNGRNSLPSYNFEFITLKELLLDSNFRGGGISVINSLRTNIDNCYITHFTTNGILVQSGHETYIRNSFLGQHITAGGDKNERNFSGTGITLQGNDNAVTDVVIFSAAIGIMVTGQANAFSGVHCYNKATGFGGTGIYLKLPGLTQTRIVNSYMDYTSIVAEDPVQLHISSSFFLGDANIVLKSKNGIVNGVDIVDNMFSGSNQGVEIVQLDQSNSPFQQIDQVIVDRNIARGMKLKATVAKMSMQGNGTSWSVDFNNVLLFPNLIKNVQYSLSSSGSTFPNHALRNVSENRVVIETNEAVAANVFVTVDQSALS* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0436 498 PANTHER POLYGALACTURONASE QRT3 1 496 IPR039279 GO:0004650
Gso9g0436 498 PANTHER POLYGALACTURONASE QRT3-LIKE PROTEIN 1 496 - -
Gso9g0436 498 SUPERFAMILY Pectin lyase-like 87 481 IPR011050 -
Gso9g0436 498 Gene3D - 89 498 IPR012334 -
Gso9g0436 498 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Gso9g0436 498 Pfam Pectate lyase superfamily protein 91 314 IPR024535 -
Gso9g0436 498 SMART pbh1 277 298 IPR006626 -
Gso9g0436 498 SMART pbh1 156 181 IPR006626 -
Gso9g0436 498 SMART pbh1 372 393 IPR006626 -
Gso9g0436 498 SMART pbh1 220 242 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0436 Gso-Chr9 4370464 4373160 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0436 - - gmx:100804107 946.421