Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0417 ATGCCACAACCAAAGGGGTTTTACTATGACTCTGAGAAGAGCAGGTATTTCCCCATCAAAGGCCCTATTCCTGGTTCTTCTTCCAAGCCTATGACCCCTGCTCTTAACTCACCCCAAACCTCCTCCAACCAGGAAAGTGGTGGGAGTTGTTGTAGGAAGCTTAGAAACAGAACCCCGTCTAAGCTGCTTCGGGCTAGGGAGTTGGATGGTCACTGTGCCATTGCCTCTCGCTATTGCAGAAGTAACTTCACCGAGGAATTCCGGAAGATGCAAGCATCTAGACCTGTGATCTGGAAGTATCGGGGAACTGATGGGATGCGTATTACTGCTTTGGAACACTTGCGCGTTGATGTGCAGACGTCGGCAGGGAAAACTGAAACTGATGTTTTGTTGACGGGCAGCACAAATGGCTCGATGAGTTTTTCTCAAGTTGGAGGGGTTGGGCGTAATCATGATGGTGGGACAAAATGGAGGGCAGATTGTGTGAAGAATTATGTTAAAGGGAGAACAGATGAGAATAATGAGGTGCTTAAGCCAGTTTTTAAACCTAATCGAGCTGCACTGCTTATGTCCTCCAGAATATCTAGTATAAGATTGGGTCCAAAGTTCTCTTCTCACGCTGTCAATGATGGTCATATTGTTGGACGTGCATTATTTACTACATTGGGATCAGAGACATCAGGTGGAACAGTTTATACTCTTGATCTTGTTGAACCATTAAATCTTGGACCAGGTATACTGAACACATGGAGCGGACTGGAGGAAATTGCATCTTTCAGGGGTACCATTTGGACATCAGAATATGATTATAATAGACATCGGGCTGTAATTGGTACAAATTTGGGAGCTGCTTCAGTGGATCTGGAAACTGGGACAATGTCATGGTTTTTACACTGTAAAAGTGATGTTTTTGCGCAACAGATTGTTAATTCGGGAAATGTGATTTTATGTGGGCTAAGAAATGGGGCAATTGTCACTGTTGATTCTCGTGAGAGAAGAGAAAGCCTTTCTGGTAGACTTATTACCCATCGGATACCATATGCATCTTCAGACAAGAAAGTTGTAGGTTCTAATAAAGAATGGTTCAAGCTCAAAGGAGACATATATCCTTCTCATACCATTCGGATGTCTTCATCTATTTCCTGTTTGGCATCACTTCAGTTTGATGATCAGTACTTCTTGGCAAGCTCAATGGATGGATCGATGAAACTTTATGATCTTCGTCTACTTCAGAGGGGTGCTGTTCAATGTTATGAAGGGCATGTGAATTCTCATACTCGTATACAGATGGGCGTTGATCCATCTGAGAGATTTGTTATGTCAGGTGGAAATGATTGCAAGCTAAGGTTATGGAGTATCAAGTCTGGTGAACTTCTTTTCGAGGACAAGTTCTCTGATTCCATTATCTCCACCGTGTGCTATAAAACATATGGACATAGTTTTAAAGCAGAAGAGGAAAACCAATACAAGTGCGACTCGTCTCAGGGTGCATGGCTTGGATCATATGAAGGACTGTTTTATATGTGCTGGTTATGA 1536 0.4297 MPQPKGFYYDSEKSRYFPIKGPIPGSSSKPMTPALNSPQTSSNQESGGSCCRKLRNRTPSKLLRARELDGHCAIASRYCRSNFTEEFRKMQASRPVIWKYRGTDGMRITALEHLRVDVQTSAGKTETDVLLTGSTNGSMSFSQVGGVGRNHDGGTKWRADCVKNYVKGRTDENNEVLKPVFKPNRAALLMSSRISSIRLGPKFSSHAVNDGHIVGRALFTTLGSETSGGTVYTLDLVEPLNLGPGILNTWSGLEEIASFRGTIWTSEYDYNRHRAVIGTNLGAASVDLETGTMSWFLHCKSDVFAQQIVNSGNVILCGLRNGAIVTVDSRERRESLSGRLITHRIPYASSDKKVVGSNKEWFKLKGDIYPSHTIRMSSSISCLASLQFDDQYFLASSMDGSMKLYDLRLLQRGAVQCYEGHVNSHTRIQMGVDPSERFVMSGGNDCKLRLWSIKSGELLFEDKFSDSIISTVCYKTYGHSFKAEEENQYKCDSSQGAWLGSYEGLFYMCWL* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0417 511 SMART WD40_4 411 452 IPR001680 GO:0005515
Gso9g0417 511 SMART WD40_4 367 406 IPR001680 GO:0005515
Gso9g0417 511 MobiDBLite consensus disorder prediction 29 53 - -
Gso9g0417 511 SUPERFAMILY WD40 repeat-like 226 473 IPR036322 GO:0005515
Gso9g0417 511 Pfam WD domain, G-beta repeat 416 452 IPR001680 GO:0005515
Gso9g0417 511 Pfam WD domain, G-beta repeat 372 406 IPR001680 GO:0005515
Gso9g0417 511 Gene3D - 254 501 IPR015943 GO:0005515
Gso9g0417 511 MobiDBLite consensus disorder prediction 1 53 - -
Gso9g0417 511 ProSiteProfiles Trp-Asp (WD) repeats profile. 418 461 IPR001680 GO:0005515
Gso9g0417 511 PANTHER KATANIN P80 SUBUNIT 9 509 - -
Gso9g0417 511 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 9 509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0417 Gso-Chr9 4133356 4140455 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0417 391 481 Miscellaneous Gene Families AT5G08390 27.473 1.99e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0417 K11799 - gmx:100797740 1027.31