Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0393 ATGAGTCAGGAATCGTTTATATATAGCTTCGTGGCTCGTGGGACGATGCTGTTAGCAGAGTACACGGAGTTCACTGGAAACTTCCCTGCCATTGCAGCTCAGTGTCTTCAGAAGCTTCCATCTTCCAACAACAAGTTCACTTACAACTGTGACCACCACACCTTCAATTTCCTTGTTGAAGATGGTTATGCTTACTGTGTTGTTGCTAAGGAATCTGTTAGCAAGCAGATCTCTATTGCTTTCCTTGAACGTGTCAAGGCTGATTTTAAGAAAAGATATGGGGGTGGAAAAGCAGATACAGCCATTGCCAAGAGTCTGAACAAGGAGTTTGGACCAGTTATGAAGGAGCACATGAAGTATATCATCAATCATGCTGAAGAGATTGTAAAGCTAATAAAAGTGAAGGCTCAAGTTTCAGAAGTTAAAAGTATTATGTTAGAAAATATAGACAAGGCCCTTGATAGAGGAGAAAATCTAACTATTCTTGCGGATAAGACGGAGGCATTGCGTTCACATGCTCAAGATTTCAGAAAGCAAGGAACACAAGTTCGTCGGAAGATGTGGTATCAGAACATGAAAATTAAATTGGTTGTTCTGGGAATATTGTTGGTTTTGGTCTTGGTTATCTGGCTTTCTATTTGTGGTGGATTTGATTGTACAAACTGGCAGTAA 672 0.4033 MSQESFIYSFVARGTMLLAEYTEFTGNFPAIAAQCLQKLPSSNNKFTYNCDHHTFNFLVEDGYAYCVVAKESVSKQISIAFLERVKADFKKRYGGGKADTAIAKSLNKEFGPVMKEHMKYIINHAEEIVKLIKVKAQVSEVKSIMLENIDKALDRGENLTILADKTEALRSHAQDFRKQGTQVRRKMWYQNMKIKLVVLGILLVLVLVIWLSICGGFDCTNWQ* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0393 223 Gene3D - 118 214 - -
Gso9g0393 223 ProSiteProfiles Longin domain profile. 10 114 IPR010908 -
Gso9g0393 223 SUPERFAMILY SNARE fusion complex 129 192 - -
Gso9g0393 223 Gene3D Longin domain 6 117 - -
Gso9g0393 223 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 130 190 IPR042855 -
Gso9g0393 223 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN 724 1 220 - -
Gso9g0393 223 SMART Longin_2 31 113 IPR010908 -
Gso9g0393 223 Pfam Synaptobrevin 130 215 IPR042855 -
Gso9g0393 223 CDD Longin 7 120 IPR010908 -
Gso9g0393 223 Pfam Regulated-SNARE-like domain 32 110 IPR010908 -
Gso9g0393 223 ProSitePatterns Synaptobrevin signature. 148 167 IPR001388 GO:0016021|GO:0016192
Gso9g0393 223 CDD R-SNARE 130 188 - -
Gso9g0393 223 PRINTS Synaptobrevin signature 135 154 IPR001388 GO:0016021|GO:0016192
Gso9g0393 223 PRINTS Synaptobrevin signature 155 174 IPR001388 GO:0016021|GO:0016192
Gso9g0393 223 PRINTS Synaptobrevin signature 191 210 IPR001388 GO:0016021|GO:0016192
Gso9g0393 223 SUPERFAMILY SNARE-like 6 121 IPR011012 -
Gso9g0393 223 PANTHER SNARE PROTEINS 1 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0393 Gso-Chr9 3824053 3826671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0393 1 220 Miscellaneous Gene Families AT1G04760 68.636 5.46e-112 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0393 K08511 - gmx:100786244 424.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g2100 7 44867974 44870806 Gso9g0393 9 3824053 3826671 PCT
Gso17g0202 17 1895172 1898075 Gso9g0393 9 3824053 3826671 PCT
Gso9g0393 9 3824053 3826671 Gso7g2100 7 44867974 44870806 PCT
Gso9g0393 9 3824053 3826671 Gso17g0202 17 1895172 1898075 PCT