Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0377 ATGGAGGTGGAGCCCGTGGAGCCGCAGTCGCTGAAGAAGCTAAGCTTCAAGTCTCTGAAGCGCGCTCTCGATCTCTTCTCTCCCATCCACGGACACCTCGCTACTCCCGATGCCGAAAGCAAGAAAATACGCACTAGCCACAAGGTGAGCGTGGAGTATGGTGGAATCAAAAGCACTGCCAATCAACCTCCTCCTCGTCAAATTAGTTCTGCCACCCAGGATCCAGGGCCCTCTAACACTCTTGCTCTTCCAGGTCCCGGAGATTCCAAGGATTCTCAGAAAGGAGGACCCCAAAATGCCTTGGTTGTTGGTCCAACTATCCCATCCACAACACCGAATGATACTGGCTTTCAGAACAAAAGTACAGCGGTTGTTTCAGCCTCTGGTTCATCTGAAAGAAATTTATCAACATCTGCTTTGATGGAAAGAATGCCAAGTAAATGGCCACGTCCTGTATGGCACGCACCATGGAAGAACTACAGGGTCATCAGCGGTCACTTGGGATGGGTGAGATCTGTTGCAGTTGATCCCAGTAACACATGGTTTTGTACTGGTTCTGCAGATCGAACTATCAAGATATGGGACTTGGCAAGTGGAGTATTGAAGCTCACATTAACAGGCCACATTGAACAAGTTAGAGGTCTTGCTGTTAGCAACAGACATACTTACATGTTCTCTGCTGGTGACGATAAACAAGTTAAATGTTGGGATCTTGAACAGAATAAGGTTATTAGGTCTTATCATGGTCATCTGAGTGGTGTTTATTGCTTGGCTCTTCATCCCACAATTGACGTTTTACTAACCGGAGGACGTGATTCTGTCTGCCGGGTTTGGGATATACGAAGTAAAATGCAGATTCATGCTCTTTCAGGTCATGATAACACTGTCTGTTCTGTGTTTACGCGGCCAACGGATCCCCAAGTTGTTACAGGTTCTCATGACACTACCATCAAGATGTGGGACCTTAGATATGGTAAAACAATGTCAACTCTTACAAACCATAAAAAATCTGTTCGAGCAATGGCCCAGCATCCCAAAGAGCAAGCTTTTGCATCTGCTTCAGCTGACAATATTAAAAAGTTCACCCTTCCAAAAGGAGAATTTTGCCACAATATGCTCTCTCAACAGAAAACTATCATCAATGCAATGGCTGTCAATGAGGAGGGTGTGATGGTTACTGGAGGCGACAATGGCAGCATGTGGTTCTGGGATTGGAAGAGTGGTCACAATTTCCAGCAATCCCAAACAATTGTCCAGCCTGGTTCATTGGACAGTGAAGCTGGTATTTATGCTTGTACCTATGATCTTACTGGTTCGAGGCTCATAACCTGCGAAGCTGACAAGACGATAAAAATGTGGAAAGAAGATGAGAGTGCCACTCCAGAAACCCATCCCCTTAACTTCAGGCCTCCTAAAGACATCCGTCGATTCTAG 1434 0.4596 MEVEPVEPQSLKKLSFKSLKRALDLFSPIHGHLATPDAESKKIRTSHKVSVEYGGIKSTANQPPPRQISSATQDPGPSNTLALPGPGDSKDSQKGGPQNALVVGPTIPSTTPNDTGFQNKSTAVVSASGSSERNLSTSALMERMPSKWPRPVWHAPWKNYRVISGHLGWVRSVAVDPSNTWFCTGSADRTIKIWDLASGVLKLTLTGHIEQVRGLAVSNRHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLALHPTIDVLLTGGRDSVCRVWDIRSKMQIHALSGHDNTVCSVFTRPTDPQVVTGSHDTTIKMWDLRYGKTMSTLTNHKKSVRAMAQHPKEQAFASASADNIKKFTLPKGEFCHNMLSQQKTIINAMAVNEEGVMVTGGDNGSMWFWDWKSGHNFQQSQTIVQPGSLDSEAGIYACTYDLTGSRLITCEADKTIKMWKEDESATPETHPLNFRPPKDIRRF* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0377 477 PRINTS G protein beta WD-40 repeat signature 182 196 IPR020472 -
Gso9g0377 477 PRINTS G protein beta WD-40 repeat signature 266 280 IPR020472 -
Gso9g0377 477 PRINTS G protein beta WD-40 repeat signature 308 322 IPR020472 -
Gso9g0377 477 MobiDBLite consensus disorder prediction 30 131 - -
Gso9g0377 477 CDD WD40 159 454 - -
Gso9g0377 477 ProSiteProfiles Trp-Asp (WD) repeats profile. 289 330 IPR001680 GO:0005515
Gso9g0377 477 ProSiteProfiles Trp-Asp (WD) repeats profile. 247 288 IPR001680 GO:0005515
Gso9g0377 477 SMART WD40_4 366 404 IPR001680 GO:0005515
Gso9g0377 477 SMART WD40_4 416 454 IPR001680 GO:0005515
Gso9g0377 477 SMART WD40_4 282 321 IPR001680 GO:0005515
Gso9g0377 477 SMART WD40_4 156 195 IPR001680 GO:0005515
Gso9g0377 477 SMART WD40_4 198 237 IPR001680 GO:0005515
Gso9g0377 477 SMART WD40_4 324 362 IPR001680 GO:0005515
Gso9g0377 477 SMART WD40_4 240 279 IPR001680 GO:0005515
Gso9g0377 477 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 163 199 - -
Gso9g0377 477 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 247 282 - -
Gso9g0377 477 PANTHER BNAA01G27690D PROTEIN 5 477 - -
Gso9g0377 477 MobiDBLite consensus disorder prediction 103 131 - -
Gso9g0377 477 ProSiteProfiles Trp-Asp (WD) repeats profile. 163 204 IPR001680 GO:0005515
Gso9g0377 477 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 289 323 - -
Gso9g0377 477 ProSitePatterns Trp-Asp (WD) repeats signature. 266 280 IPR019775 -
Gso9g0377 477 MobiDBLite consensus disorder prediction 55 79 - -
Gso9g0377 477 SUPERFAMILY WD40 repeat-like 152 454 IPR036322 GO:0005515
Gso9g0377 477 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 205 242 - -
Gso9g0377 477 MobiDBLite consensus disorder prediction 456 477 - -
Gso9g0377 477 ProSiteProfiles Trp-Asp (WD) repeats profile. 205 246 IPR001680 GO:0005515
Gso9g0377 477 ProSitePatterns Trp-Asp (WD) repeats signature. 308 322 IPR019775 -
Gso9g0377 477 PANTHER WD40 REPEAT PROTEINPRL1/PRL2-RELATED 5 477 IPR045241 GO:0000398
Gso9g0377 477 Gene3D - 142 477 IPR015943 GO:0005515
Gso9g0377 477 Pfam WD domain, G-beta repeat 158 195 IPR001680 GO:0005515
Gso9g0377 477 Pfam WD domain, G-beta repeat 203 237 IPR001680 GO:0005515
Gso9g0377 477 Pfam WD domain, G-beta repeat 286 321 IPR001680 GO:0005515
Gso9g0377 477 Pfam WD domain, G-beta repeat 242 279 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0377 Gso-Chr9 3664058 3670210 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0377 244 453 Miscellaneous Gene Families AT5G08390 29.630 3.98e-18 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0377 K12862 - gmx:100782357 973.77